FMO11237.5prime Sequence
812 bp (812 high quality bases) assembled on 2011-12-02
> FMO11237.5prime
CAGTCGACATGCATACCCTCACGGCGGCCATTGAGATGGACAAGCTGGAT
GCCAATCTTGAGCAGCAGTTTGATCTCAATCTCATCGAGGCTGTCAAGCT
GAACCCAGTGATATACGACAGGTCGCACTACAATTACAAGCACTTTGTGC
GCAAGGCCCAGACCTGGAAACAAATCGCCGAAACGCTCGGTGTGCCTGAA
CAAAAATGTACGAAGCGCTGGAAGAGTCTGCGCGACAAGTTCGCCCGCGA
GATGAAACTATGTCAGGAATCGCGCTGGCGTTACTTCAAGCAGATGCAAT
TCCTGGTTGACTCCATCCGCCAGTATCGAGAGTCGCTGCTCGGCAAGTGC
GCCAATGGGAGTCAAAGCGCCAACCAGGTGGCCGATCCGTCGCAGCAGCA
GCAGGCGCAGCAACAGACCGTCGTGGATATATTTGCACAGCCCTTCAACG
GCAGCGCCACAACCTCGGCCCAGGCACTGACCCATCCGCATGAAATTACT
GTCACCAGCGATGCACAGCTGGCCACTGCCGTGGGCAAGGACCAAAAGCC
ATACTTCTACGAGCCGCCGCTCAAGCGAGAGCGCAGTGAGGAGGAGCACA
GCGACAACATGCTCAACACCATCAAGATTTTCCAAAACAACGTCTCGCAG
GCGGTCAGCGCCGAGGACCAGTCGTTCGGCATGGTAGTCACGGACATGCT
CAACACGCTGGGCGTGCGACAAAAGGCAGAGGCGAAGGTGCACATCATCA
AGTATCTGACGGACATGCAGCTTCTGGCACAGCACAACAAGTACGCAAGC
TTTCTAGACCAT
FMO11237.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:22:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Adf1-RC | 1675 | CG15845-RC | 179..964 | 9..794 | 3930 | 100 | Plus |
| Adf1-RE | 1668 | CG15845-RE | 173..957 | 10..794 | 3925 | 100 | Plus |
| Adf1-RB | 1795 | CG15845-RB | 300..1084 | 10..794 | 3925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:22:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6667072..6667374 | 492..794 | 1515 | 100 | Plus |
| 2R | 25286936 | 2R | 6666719..6667013 | 198..492 | 1475 | 100 | Plus |
| 2R | 25286936 | 2R | 6662569..6662757 | 10..198 | 945 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:22:57 has no hits.
FMO11237.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:51 Download gff for
FMO11237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Adf1-RC | 174..973 | 1..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:20:07 Download gff for
FMO11237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Adf1-RC | 173..972 | 1..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:25 Download gff for
FMO11237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Adf1-RC | 173..972 | 1..804 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:25 Download gff for
FMO11237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6662565..6662757 | 4..198 | 98 | -> | Plus |
| 2R | 6666720..6667013 | 199..492 | 100 | -> | Plus |
| 2R | 6667073..6667382 | 493..804 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:20:07 Download gff for
FMO11237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2550070..2550262 | 4..198 | 98 | -> | Plus |
| arm_2R | 2554225..2554518 | 199..492 | 100 | -> | Plus |
| arm_2R | 2554578..2554887 | 493..804 | 98 | | Plus |
