FMO11238.5prime Sequence
1133 bp (998 high quality bases) assembled on 2011-12-02
> FMO11238.5prime
CAGTCGACATGTTGTACATTGCCGAGGAGAAGAAGAAACTGGGCAACGAC
CAATACAAGGCGCAGAACTATCAGAATGCACTCAAGCTCTACACGGATGC
CATATCGCTGTGTCCGGACTCGGCGGCATACTATGGCAATCGGGCCGCCT
GCTACATGATGCTGCTCAACTATAATAGCGCCCTGACCGACGCCCGACAC
GCCATACGCATCGATCCGGGCTTCGAGAAGGCCTACGTCCGTGTGGCCAA
GTGCTGTCTGGCCCTGGGCGACATTATTGGCACCGAACAGGCCGTCAAAA
TGGTCAACGAGCTGAATTCGCTTAGCACGGCTGTTGCTGCCGAACAGACG
GCGGCGCAAAAGTTGCGCCAATTGGAGGCCACCATTCAGGCGAACTACGA
TACGAAATCCTATCGCAATGTGGTCTTCTATTTGGATAGTGCCTTGAAAT
TGGCGCCCGCCTGTTTGAAATATCGTCTACTCAAGGCTGAGTGCCTTGCA
TTTTTGGGGCGATGTGATGAGGCCTTGGACATTGCGGTCAGTGTAATGAA
ACTGGATACCACATCGGCGGATGCGATATACGTGAGAGGTCTGTGCCTGT
ACTACACGGACAACCTGGACAAGGGAATTCTTCATTTCGAGCGCGCCCTG
ACCCTCGACCCGGACCACTACAAGTCCAAAGCAGATGCGCAGCAAATGCA
AGCAGCTCAAGGAGATGAAGGAGAACGGCAATATGCTATTCAAGTCGGGT
CGGTATCGCGAGGCACACGTTATCTACACGGACGCCCTGAAGATCGATGA
ACACAACAAGGATATCAATTCGAAATTGCTTTACAATCGGGCTTTGGTCA
ACCACGCGTATTGGCCATTTGCGAGAGGCCGTGCCCGAATTGCAATCGAG
TGCTGGAGCTGAATAGTCAGTATCTGAAGGCTCTGTTGCTGCGAGCCGCG
CTGCTACAATGATCTGGAGAAGTTCGAGGAGTCGTGACGGACTATGAGAC
GCGCTGCAGCTGGAGAAACGCCGGAAATAGCGAATGCCTGCCGAGGCCAG
TTTGGCGTTGAAAATTCGAGCGAATGACTACTCACAGAATCCTGGGATTG
AAGCAATGGCGTCCGACTGACCGAATCTAAGAT
FMO11238.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:23:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tpr2-RE | 2373 | CG4599-RE | 646..1758 | 9..1117 | 4980 | 97.4 | Plus |
Tpr2-RB | 2103 | CG4599-RB | 376..1488 | 9..1117 | 4980 | 97.4 | Plus |
Tpr2-RD | 2503 | CG4599-RD | 513..1617 | 17..1117 | 4940 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:23:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16506008..16506601 | 470..1062 | 2410 | 96.7 | Plus |
2L | 23513712 | 2L | 16505496..16505948 | 17..469 | 2265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:23:07 has no hits.
FMO11238.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:52 Download gff for
FMO11238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tpr2-RB | 379..1411 | 9..1041 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:20:12 Download gff for
FMO11238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tpr2-RB | 376..1408 | 9..1041 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:28 Download gff for
FMO11238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tpr2-RB | 376..1408 | 9..1041 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:28 Download gff for
FMO11238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16505490..16505948 | 12..469 | 99 | -> | Plus |
2L | 16506008..16506579 | 470..1041 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:20:12 Download gff for
FMO11238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16505490..16505948 | 12..469 | 99 | -> | Plus |
arm_2L | 16506008..16506579 | 470..1041 | 97 | | Plus |