Clone FMO11238 Report

Search the DGRC for FMO11238

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:112
Well:38
Vector:pMK33-CFH-BD
Associated Gene/TranscriptTpr2-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11238.5prime Sequence

1133 bp (998 high quality bases) assembled on 2011-12-02

> FMO11238.5prime
CAGTCGACATGTTGTACATTGCCGAGGAGAAGAAGAAACTGGGCAACGAC
CAATACAAGGCGCAGAACTATCAGAATGCACTCAAGCTCTACACGGATGC
CATATCGCTGTGTCCGGACTCGGCGGCATACTATGGCAATCGGGCCGCCT
GCTACATGATGCTGCTCAACTATAATAGCGCCCTGACCGACGCCCGACAC
GCCATACGCATCGATCCGGGCTTCGAGAAGGCCTACGTCCGTGTGGCCAA
GTGCTGTCTGGCCCTGGGCGACATTATTGGCACCGAACAGGCCGTCAAAA
TGGTCAACGAGCTGAATTCGCTTAGCACGGCTGTTGCTGCCGAACAGACG
GCGGCGCAAAAGTTGCGCCAATTGGAGGCCACCATTCAGGCGAACTACGA
TACGAAATCCTATCGCAATGTGGTCTTCTATTTGGATAGTGCCTTGAAAT
TGGCGCCCGCCTGTTTGAAATATCGTCTACTCAAGGCTGAGTGCCTTGCA
TTTTTGGGGCGATGTGATGAGGCCTTGGACATTGCGGTCAGTGTAATGAA
ACTGGATACCACATCGGCGGATGCGATATACGTGAGAGGTCTGTGCCTGT
ACTACACGGACAACCTGGACAAGGGAATTCTTCATTTCGAGCGCGCCCTG
ACCCTCGACCCGGACCACTACAAGTCCAAAGCAGATGCGCAGCAAATGCA
AGCAGCTCAAGGAGATGAAGGAGAACGGCAATATGCTATTCAAGTCGGGT
CGGTATCGCGAGGCACACGTTATCTACACGGACGCCCTGAAGATCGATGA
ACACAACAAGGATATCAATTCGAAATTGCTTTACAATCGGGCTTTGGTCA
ACCACGCGTATTGGCCATTTGCGAGAGGCCGTGCCCGAATTGCAATCGAG
TGCTGGAGCTGAATAGTCAGTATCTGAAGGCTCTGTTGCTGCGAGCCGCG
CTGCTACAATGATCTGGAGAAGTTCGAGGAGTCGTGACGGACTATGAGAC
GCGCTGCAGCTGGAGAAACGCCGGAAATAGCGAATGCCTGCCGAGGCCAG
TTTGGCGTTGAAAATTCGAGCGAATGACTACTCACAGAATCCTGGGATTG
AAGCAATGGCGTCCGACTGACCGAATCTAAGAT

FMO11238.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
Tpr2-RE 2373 CG4599-RE 646..1758 9..1117 4980 97.4 Plus
Tpr2-RB 2103 CG4599-RB 376..1488 9..1117 4980 97.4 Plus
Tpr2-RD 2503 CG4599-RD 513..1617 17..1117 4940 97.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:23:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16506008..16506601 470..1062 2410 96.7 Plus
2L 23513712 2L 16505496..16505948 17..469 2265 100 Plus
Blast to na_te.dros performed on 2014-11-27 00:23:07 has no hits.

FMO11238.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:52 Download gff for FMO11238.5prime
Subject Subject Range Query Range Percent Splice Strand
Tpr2-RB 379..1411 9..1041 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:20:12 Download gff for FMO11238.5prime
Subject Subject Range Query Range Percent Splice Strand
Tpr2-RB 376..1408 9..1041 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:28 Download gff for FMO11238.5prime
Subject Subject Range Query Range Percent Splice Strand
Tpr2-RB 376..1408 9..1041 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:28 Download gff for FMO11238.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16505490..16505948 12..469 99 -> Plus
2L 16506008..16506579 470..1041 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:20:12 Download gff for FMO11238.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16505490..16505948 12..469 99 -> Plus
arm_2L 16506008..16506579 470..1041 97   Plus