FMO11239.5prime Sequence
597 bp (597 high quality bases) assembled on 2011-12-02
> FMO11239.5prime
CAGTCGACATGGAGGAATTTAATTCGAGCGGATCAGTAGTTAATGGTACA
GGATCTACGGAAGTTCCTCAATCTAATGCTGAAGTTATAAGGGGACAAAT
ATTTGAAGTTGGTCCTAGGTATATTAAACTCGCCTATATAGGTGAAGGAG
CTTATGGCATGGTTGTGTCTGCGGATGACACGCTAACAAACCAAAGAGTT
GCAATAAAAAAAATATCGCCCTTTGAACACCAAACTTATTGTCAAAGGAC
TCTCAGAGAAATAACCATATTGACCAGATTTAAACATGAAAACATTATTG
ATATTCGAGATATTCTTCGAGTTGATAGCATAGACCAAATGAGAGATGTT
TATATTGTACAGTGTTTGATGGAGACTGATTTGTATAAACTACTTAAAAC
ACAGGTAATGGTGCTCCCTGATATTTGGTTAAAATTTATTGAAAGAATAA
CTACCATTGATATGTGGTGTATTATCTTGGCCATTACTCCAAATACCAAG
ACTGAGTACAATTGTAGGTTGTCGGACATTTTCAATTATGGAAGTGATTC
GCGTTATGCTTTCATGCGGGCTTTAAAAAGCAAGCTTTCTAGACCAT
FMO11239.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:23:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rl-RA | 1412 | CG12559-RA | 307..877 | 8..578 | 2855 | 100 | Plus |
| rl-RI | 2072 | CG12559-RI | 102..498 | 8..404 | 1985 | 100 | Plus |
| rl-RC | 1614 | CG12559-RC | 126..522 | 8..404 | 1985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:23:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 1080331..1080615 | 294..578 | 1425 | 100 | Plus |
| 2R | 25286936 | 2R | 1072281..1072441 | 8..168 | 805 | 100 | Plus |
| 2R | 25286936 | 2R | 1076635..1076761 | 167..293 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:23:16 has no hits.
FMO11239.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:53 Download gff for
FMO11239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rl-RA | 317..900 | 1..586 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:20:17 Download gff for
FMO11239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rl-RA | 300..883 | 1..586 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:30 Download gff for
FMO11239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rl-RA | 300..883 | 1..586 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:30 Download gff for
FMO11239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 1072274..1072439 | 1..166 | 97 | -> | Plus |
| 2R | 1076635..1076761 | 167..293 | 100 | -> | Plus |
| 2R | 1080331..1080621 | 294..586 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:20:17 Download gff for
FMO11239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2RHet | 198988..199153 | 1..166 | 97 | -> | Plus |
| 2RHet | 203349..203475 | 167..293 | 100 | -> | Plus |
| 2RHet | 207045..207335 | 294..586 | 98 | | Plus |
