FMO11242.5prime Sequence
740 bp (740 high quality bases) assembled on 2011-12-02
> FMO11242.5prime
CAGTCGACATGGTTTTGACGAACTTCGAGTGCTGGGCACATGGTGATCCG
TCGTCGTCGGCGGCCGCCACTTTCGAAACTGGAGCGCTGCGTCCTTCGAT
GGATCCGTTCAATCCACGCGCCGTCACCTTCATGACCGACGCCAACAACA
ACAACAACAACAATGATGGCAATAACCTCGCGGCACAACCGATGCCGGTC
GTCCTGCCTCCGGAAGTCCTGCGCTGCAAGAAGCGCCTGAATCCCGGTCA
CAATCCTGTCGGGGATTTGGACACGGACCAACCGGTGTACACCAAGAGAT
GTCGCTACGACGAGTCTGACTTGGCCGCCCAGTACTGCAATGATTTCTTT
TCCTTGCCTGCCACACAAATAATTGGAACGCAGGCCTCTTTGATGGATTA
CGAGATGCAGGCCACCGGCGGCATGATGATGATGGAATCGGAGACGAGTT
TTCCAGCGCAGCAGCAGCAACATCAAGAGCAACAGCAACATCCACAGCAG
CCACATCAATATCAGCGCATTCATCAGCATTATCAAGAATCCGCAGAGCA
ACGAGTGCCGTCCCCGCAGCAAAAGTCAAGAAAATCTAATAATTCTATTG
GGAAAATCAAATTAAAGTCCATAGGCAGCGAAGCCGAAGCGGACTTGTAT
ATAGCCACACACGGCGGCAGTCTGCACCACTTTTGTGGGCTCGGCGGATC
GGAGCTAGAGGAGTCTGATATAGCAAGCTTTCTAGACCAT
FMO11242.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:23:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32428-RC | 1238 | CG32428-RC | 399..1112 | 9..722 | 3570 | 100 | Plus |
| CG32428-RB | 1804 | CG32428-RB | 345..873 | 9..537 | 2645 | 100 | Plus |
| CG32428-RA | 1213 | CG32428-RA | 399..927 | 9..537 | 2645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:23:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20472641..20472974 | 342..9 | 1670 | 100 | Minus |
| 3L | 28110227 | 3L | 20470954..20471149 | 537..342 | 980 | 100 | Minus |
| 3L | 28110227 | 3L | 20469800..20469986 | 722..536 | 935 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:23:45 has no hits.
FMO11242.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:55 Download gff for
FMO11242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32428-RC | 350..1069 | 1..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:20:34 Download gff for
FMO11242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32428-RC | 393..1112 | 1..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:41 Download gff for
FMO11242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32428-RC | 393..1112 | 1..722 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:41 Download gff for
FMO11242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20469800..20469984 | 538..722 | 100 | <- | Minus |
| 3L | 20470954..20471148 | 343..537 | 100 | <- | Minus |
| 3L | 20472641..20472978 | 1..342 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:20:34 Download gff for
FMO11242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20462900..20463084 | 538..722 | 100 | <- | Minus |
| arm_3L | 20464054..20464248 | 343..537 | 100 | <- | Minus |
| arm_3L | 20465741..20466078 | 1..342 | 98 | | Minus |
