Clone FMO11244 Report

Search the DGRC for FMO11244

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:112
Well:44
Vector:pMK33-CFH-BD
Associated Gene/Transcriptqjt-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11244.5prime Sequence

725 bp (725 high quality bases) assembled on 2011-12-02

> FMO11244.5prime
CAGTCGACATGGAATTCAATTACCTTGCTGATTCCGCACTTTCCACTTTA
GTGGAAAACAAAAAGTTCTTCAAGGAAATGTCAGATTTCGTGTCCGATTT
CAGCGATGGCGGGAAGATCAAGAAGTTGCTCGAGCAGAGCGTTGAGCAGA
GCGTGGAGCACGCCGTGAATGTAGTCCATATGAAGATAAAGCACCAATCG
CTCAACAAGGCTATGAATCAGGTCAAAAACTCTAGCGCCACCATCGAGGA
GTTCGAGGAAGTCTGGAAGGAACGCTCCAAAGCGGTGGAGCAGAAGCGCA
TCAATGTCAAGAATCTACACGAGTTCAAGAACTTCGTAAAAGCAGTTGAA
TCAGCAGCTGGTCAGGCGGGTGCGGAAGTCAATGATCAAGCGAATGGCAC
CGCCTATGATGAGGACCTTATTATGGAAGACTCCGGCAGCGAGGTCTTCT
CGTTCTACGATCCCTGGTCCAAGGCCCTGACAAAGAACCCCATGCGCAAC
AAAATGTGCGGTCACATCTACGACCGCGACTCGGTGATGCCGATCATAAT
GGACCGCATTGGCATCCGATGCCCGGTGCTCGGCTGCGCCAACTTGTGCT
ACATCCAGCCAGATCACCTGGTCCAGGACGCCAATGTCCAGCAAAAGATA
CAACAGAGCATGTCTAACGCGATCGTGGATGTAACTGCCTCGGAGGAGGA
CGAGGAAGCAAGCTTTCTAGACCAT

FMO11244.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:24:11
Subject Length Description Subject Range Query Range Score Percent Strand
qjt-RB 834 CG13732-RB 55..753 9..707 3480 99.9 Plus
qjt-RA 990 CG13732-RA 211..909 9..707 3480 99.9 Plus
cerv-RD 1141 CG15645-RD 283..960 9..707 1595 82.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:24:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17479362..17480060 9..707 3480 99.9 Plus
X 23542271 X 15577167..15577718 707..147 1345 83.1 Minus
X 23542271 X 15575060..15575354 701..407 590 80 Minus
X 23542271 X 15555366..15555660 701..407 545 79 Minus
X 23542271 X 15575375..15575510 359..224 275 80.1 Minus
X 23542271 X 15555727..15555813 310..224 270 87.4 Minus
X 23542271 X 15577813..15577889 85..9 235 87 Minus
Blast to na_te.dros performed on 2014-11-27 00:24:09 has no hits.

FMO11244.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:56 Download gff for FMO11244.5prime
Subject Subject Range Query Range Percent Splice Strand
qjt-RA 114..815 9..708 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:20:45 Download gff for FMO11244.5prime
Subject Subject Range Query Range Percent Splice Strand
qjt-RA 211..909 9..707 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:51 Download gff for FMO11244.5prime
Subject Subject Range Query Range Percent Splice Strand
qjt-RA 211..909 9..707 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:51 Download gff for FMO11244.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17479362..17480060 9..707 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:20:45 Download gff for FMO11244.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17472462..17473160 9..707 99   Plus