Clone FMO11245 Report

Search the DGRC for FMO11245

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:112
Well:45
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG42704-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11245.5prime Sequence

383 bp (383 high quality bases) assembled on 2011-12-02

> FMO11245.5prime
CAGTCGACATGAAAATTACCATTGCAATTCTAGGACTTTTTCTGGCACTT
ATTTGCAGCCTGGAATCGCCAACCGCAGCGTGCGATATCCAAGCAGTTTA
TAATCAAACCTTAAAGTTCTGCGAAAACAACTTCTTTCTGAACATATTCT
TGTGCACCGGCTTGTCTTACGGTGTCGGCAACGAGAAATTTGTTCAGACG
CTCCAGTCGCAAAGGAAGATCTTGTGTGCAATACCATTTTTTGCTGAAAT
TTGCAAAACCTGCGATTTTTCGACGATTGTCTCAAATGATCAGAATGCTA
CGATTTCAAGCGGAAATTCAACTGCAGACGCCACCCGAACTTTGAAGCTT
GCCGATCTGACGCGTGCAAGCTTTCTAGACCAT

FMO11245.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:24:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG42704-RA 501 CG42704-RA 20..376 9..365 1785 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:24:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7412973..7413171 167..365 980 99.5 Plus
X 23542271 X 7412816..7412907 80..171 460 100 Plus
X 23542271 X 7412687..7412758 9..80 360 100 Plus
Blast to na_te.dros performed on 2014-11-27 00:24:18 has no hits.

FMO11245.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:57 Download gff for FMO11245.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42704-RA 13..379 1..369 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:20:51 Download gff for FMO11245.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42704-RA 13..379 1..369 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:53 Download gff for FMO11245.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42704-RA 13..379 1..369 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:53 Download gff for FMO11245.5prime
Subject Subject Range Query Range Percent Splice Strand
X 7412680..7412758 1..80 95 -> Plus
X 7412817..7412906 81..170 100 -> Plus
X 7412977..7413174 171..369 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:20:51 Download gff for FMO11245.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7306713..7306791 1..80 95 -> Plus
arm_X 7306850..7306939 81..170 100 -> Plus
arm_X 7307010..7307207 171..369 98   Plus