Clone FMO11250 Report

Search the DGRC for FMO11250

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:112
Well:50
Vector:pMK33-CFH-BD
Associated Gene/TranscriptRab27-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11250.5prime Sequence

734 bp (734 high quality bases) assembled on 2011-12-02

> FMO11250.5prime
CAGTCGACATGCGTGCCGCGCCTCCTGAGCCTGAGCCTCTGCAATTAGCC
GGATCCGGTGAACAGTTCCTCGTCCTGGGCGACTCCGGCGTGGGAAAGAC
CTGTCTCCTCTACCAGTACACGGATGGCCGGTTCCACACCCAGTTCATCT
CCACTGTGGGCATCGACTTCCGCGAAAAGCGGCTGCTGTACAACTCCCGC
GGACGCCGCCACCGCATCCACCTGCAGATCTGGGACACCGCCGGACAGGA
GCGCTTCCGTTCACTAACCACGGCGTTTTACCGCGACGCCATGGGTTTCC
TGCTCATCTTCGACCTGACCAGCGAGAAGAGCTTCCTGGAGACGGCCAAC
TGGCTGTCGCAGCTGCGGACGCACGCCTACTCCGAGGACCCCGACGTGGT
CCTCTGCGGCAACAAGTGCGACCTGCTGCAGCTGCGCGTGGTGAGTCGCG
ACCAGGTGGCGGCCCTCTGCCGACGCTACCGGCTGCCGTACATCGAGACG
AGCGCCTGCACCGGCGCCAACGTCAAGGAGGCCGTGGAGCTGCTGGTTGG
CCGGGTCATGGAGCGGATCGAGAACGCGGCCTGCAACCGCGAGTTCTCCC
TGCTACTGACCCAGTCGCGATGCCTGCCGAACATCGCCTACGGTCAGCCG
GAGGACCTGGTGCGCCTCCACGATCGGCGAGAGGAGCCCTGCTCGCGGCG
CAACTGCCGCAACTGTGCAAGCTTTCTAGACCAT

FMO11250.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
Rab27-RB 1466 CG14791-RB 663..1370 9..716 3540 100 Plus
Rab27-RC 1564 CG14791-RC 816..1468 64..716 3265 100 Plus
Rab27-RC 1564 CG14791-RC 663..719 9..65 285 100 Plus
RabX4-RA 1416 CG31118-RA 625..724 222..321 185 79 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:25:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1473980..1474511 716..185 2660 100 Minus
X 23542271 X 1474675..1474796 185..64 610 100 Minus
X 23542271 X 1476256..1476312 65..9 285 100 Minus
3R 32079331 3R 24827475..24827574 321..222 185 79 Minus
Blast to na_te.dros performed on 2014-11-27 00:25:07 has no hits.

FMO11250.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:12:00 Download gff for FMO11250.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab27-RB 611..1326 1..716 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:21:16 Download gff for FMO11250.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab27-RB 611..1326 1..716 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:13 Download gff for FMO11250.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab27-RB 655..1370 1..716 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:13 Download gff for FMO11250.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1473980..1474510 186..716 100 <- Minus
X 1474675..1474794 66..185 100 <- Minus
X 1476256..1476317 1..65 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:21:16 Download gff for FMO11250.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1368013..1368543 186..716 100 <- Minus
arm_X 1368708..1368827 66..185 100 <- Minus
arm_X 1370289..1370350 1..65 93   Minus