FMO11252.5prime Sequence
599 bp (595 high quality bases) assembled on 2011-12-02
> FMO11252.5prime
CAGTCGACATGGCGACCGAAACTACAAAAATGATCTACACGCCACCGCCA
CTGGACATCAAAATGGAAATTGAAATTGGCGAACAACCCCAGCCTCCGGT
GAAGTGCTCCAACTTCTTCGCTAACCACTGGAAGGGATTGGTTGTGTTCC
TGGTGCCGCTGCTATGTCTGCCTGTTATGCTGCTAAACGAAGGCGCCGAA
TTTCGGTGCATGTACCTCCTTTTGGTAATGGCCATATTTTGGGTTACGGA
AGCCTTGCCTCTCTATGTGACGTCCATGATACCGATTGTGGCCTTCCCAA
TAATGGGTATAATGAGCTCGGATCAGACTTGCCGCTTGTACTTCAAGGAT
ACGCTGGTGATGTTCATGGGCGGCATTATGGTCGCCCTGGCTGTGGAGTA
CTGTAATCTACACAAACGTCTTGCCTTGAGGGTAATCCAGATCGTGGGCT
GCAGTCCCCGCAGATTACACTTTGGCCTCATCATGGTTACAATGTTTTTG
AGCATGTGGATTTCGAACGCCGCCTGTACTGCCCATGATGTGTCCCGATT
AACCAAGCCGTGCTGGAGGAGCTGCAAGCTCAAGGGTGTCTGCAAAAAT
FMO11252.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:25:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Indy-RB | 2572 | CG3979-RB | 208..794 | 8..597 | 2845 | 99.2 | Plus |
| Indy-RC | 2600 | CG3979-RC | 260..822 | 32..597 | 2725 | 99.1 | Plus |
| Indy-RD | 2581 | CG3979-RD | 242..803 | 33..597 | 2720 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:25:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18831093..18831242 | 463..314 | 750 | 100 | Minus |
| 3L | 28110227 | 3L | 18831494..18831621 | 198..71 | 640 | 100 | Minus |
| 3L | 28110227 | 3L | 18831311..18831427 | 314..198 | 585 | 100 | Minus |
| 3L | 28110227 | 3L | 18830898..18831035 | 597..457 | 510 | 95.7 | Minus |
| 3L | 28110227 | 3L | 18831947..18831985 | 70..32 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:25:24 has no hits.
FMO11252.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:12:01 Download gff for
FMO11252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Indy-RB | 197..788 | 1..599 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:21:24 Download gff for
FMO11252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Indy-RB | 204..795 | 1..599 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:19 Download gff for
FMO11252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Indy-RB | 204..795 | 1..599 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:19 Download gff for
FMO11252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18830897..18831028 | 464..599 | 95 | <- | Minus |
| 3L | 18831093..18831241 | 315..463 | 100 | <- | Minus |
| 3L | 18831311..18831427 | 198..314 | 100 | <- | Minus |
| 3L | 18831495..18831621 | 71..197 | 100 | <- | Minus |
| 3L | 18831947..18831984 | 33..70 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:21:24 Download gff for
FMO11252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18823997..18824128 | 464..599 | 95 | <- | Minus |
| arm_3L | 18824193..18824341 | 315..463 | 100 | <- | Minus |
| arm_3L | 18824411..18824527 | 198..314 | 100 | <- | Minus |
| arm_3L | 18824595..18824721 | 71..197 | 100 | <- | Minus |
| arm_3L | 18825047..18825084 | 33..70 | 100 | <- | Minus |
