FMO11253.5prime Sequence
1137 bp (1025 high quality bases) assembled on 2011-12-02
> FMO11253.5prime
CAGTCGACATGGGTTCCCTATTCCGCAGCGAGGAAATGGCGCTGTGCCAG
CTGTTCCTGCAGAGCGAGGCGGCCTACGCCTGCGTCTCCGAGTTGGGAGA
ACTGGGATTGGTCCAGTTCCGAGATCTCAATCCCGATGTCAACGCTTTCC
AGAGGAAGTTCGTCAACGAGGTGCGCCGCTGCGATGAGATGGAGCGCAAG
CTGCGTTACCTGGAGAAGGAGATCAAGAAGGACGGCATCCCCATGTTGGA
CACCGGGGAGAGTCCCGAGGCCCCGCAGCCCCGCGAGATGATCGACCTGG
AGGCCACCTTTGAGAAGCTGGAGAACGAGCTGAGGGAGGTGAATCAGAAC
GCCGAGGCCCTGAAGCGCAACTTTCTGGAGCTGACCGAGCTGAAGCATAT
TTTGCGCAAAACCCAAGTGTTCTTCGATGAGCAAGAAGGCGGCGTAAACC
AAACGACCGAGTCGATGACCCGCGCCTTGATCACGGACGAGGCGCGCACC
GCTGGTGCCTCCATGGGTCCCGTACAGCTCGGCTTCGTGGCTGGCGTCAT
CCTGAGGGAGCGACTGCCGGCCTTCGAGCGGATGTTGTGGCGCGCCTGCA
GGGGTAACGTCTTCCTGCGACAGGCGATGATTGAGACGCCGCTGGAGGAT
CCCACCAATGGCGACCAGGTGCACAAGTCCGTGTTTATAATCTTCTTCCA
GGGTGACCAGCTGAAGACGCGCGTCAAGAAGATCTGCGAGGGCTTCCGGG
CCACGCTCTATCCTTGCCCTGAAGCTCCAGCCGATCGGCGAGAGATGGCC
ATGGGTGTGATGACTCGCATCGAAGATCTGAACACCGTGCTCGGCCAGAC
GCAAGACCATCGCCATCGTGTGCTGGTCGCTGCGGCCAAGAATCTTAAGA
ACTGGATTCGTCAAGGTGCGCAGGATTAAAGGCCATCCTACCATACGCTG
AATCTCTTCATCTGGACGTGACCCAGAAATGTCTGATCGCCGAGTGCTGG
TACCGCTGCCTGGACATTGAAACCCATCAGCTGGCCTTGGCGCCGCGGGA
CCGAAAGATCGGGATCGCCGGTGCCGCCTAATCCCTACCGGATGCCAAGC
GTTCGAGAAATCCACTGGAACTCCTAATCGAACGAAT
FMO11253.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:25:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha100-1-RK | 2902 | CG1709-RK | 103..1224 | 9..1137 | 5125 | 97.6 | Plus |
| Vha100-1-RD | 3009 | CG1709-RD | 205..1326 | 9..1137 | 5125 | 97.6 | Plus |
| Vha100-1-RB | 2907 | CG1709-RB | 103..1224 | 9..1137 | 5125 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:25:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29135262..29135694 | 660..1095 | 1660 | 95.7 | Plus |
| 3R | 32079331 | 3R | 29132126..29132303 | 126..303 | 890 | 100 | Plus |
| 3R | 32079331 | 3R | 29132374..29132504 | 301..431 | 655 | 100 | Plus |
| 3R | 32079331 | 3R | 29135048..29135176 | 532..660 | 645 | 100 | Plus |
| 3R | 32079331 | 3R | 29131709..29131825 | 9..125 | 585 | 100 | Plus |
| 3R | 32079331 | 3R | 29133859..29133961 | 430..532 | 515 | 100 | Plus |
| 2L | 23513712 | 2L | 11741549..11741776 | 7..234 | 330 | 76.3 | Plus |
| 3R | 32079331 | 3R | 18393092..18393190 | 239..141 | 315 | 87.9 | Minus |
Blast to na_te.dros performed 2014-11-27 00:25:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gtwin | 7411 | gtwin GTWIN 7411bp | 6734..6800 | 500..566 | 110 | 62.7 | Plus |
FMO11253.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:12:02 Download gff for
FMO11253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-1-RJ | 238..768 | 1..531 | 99 | -> | Plus |
| Vha100-1-RJ | 811..1409 | 532..1137 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:21:27 Download gff for
FMO11253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-1-RB | 95..1224 | 1..1137 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:21 Download gff for
FMO11253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-1-RB | 95..1224 | 1..1137 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:21 Download gff for
FMO11253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29131701..29131825 | 1..125 | 96 | -> | Plus |
| 3R | 29132126..29132302 | 126..302 | 100 | -> | Plus |
| 3R | 29132376..29132504 | 303..431 | 100 | -> | Plus |
| 3R | 29133861..29133961 | 432..532 | 100 | -> | Plus |
| 3R | 29135049..29135175 | 533..659 | 100 | -> | Plus |
| 3R | 29135262..29135706 | 660..1107 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:21:27 Download gff for
FMO11253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24960771..24960897 | 533..659 | 100 | -> | Plus |
| arm_3R | 24957423..24957547 | 1..125 | 96 | -> | Plus |
| arm_3R | 24957848..24958024 | 126..302 | 100 | -> | Plus |
| arm_3R | 24958098..24958226 | 303..431 | 100 | -> | Plus |
| arm_3R | 24959583..24959683 | 432..532 | 100 | -> | Plus |
| arm_3R | 24960984..24961428 | 660..1107 | 95 | -> | Plus |
