FMO11256.5prime Sequence
1111 bp (1004 high quality bases) assembled on 2011-12-02
> FMO11256.5prime
CAGTCGACATGAGGCCGCCCAGGAGCAATACGAAAGCAGCATTTTCCTCG
CTTCAGTTTGGATTGTTATGCCTCCTATTGCTGGTCAATAATGGCATTAA
ATCGGTGCAAGCAGACGCCTTCACGGACTATTTCTCCGACTACGATTGCA
ACCAGCCGCTGATGGAAAGAGCCGTCCTCACGGCCACATCATCCTTGACG
GAAAGAGGACCCGACAAAGCACGACTAAACGCTGGCACCTCGTGGTCCGC
GAAGAACTCGGATTTCGACCAGCGTCTGATTATTGACCTGGGCGTGGTGC
GGAACGTGACGCACATCGCCCTGCAAGGACGACCACATAGCAATGAGTAC
GTCACCGAGTACACCATTAGCTATGGCATAACCGATCTAGAGTTTGCCGA
CTATAAAGAGCCGGGCGGCAATGTCAAGATGTTCAAGGGCAACTCCGATG
GCAACTCTATCCATTACAACGTCTTCGAGGTGCCCATTATTGCCCAATGG
GTGAGGATCAATCCCACCAGGTGGCACGATCGTATTTCCATGCGTGTGGA
GCTCTACGGCTGCGATTACATCTCTGAAAACCTATACTTTAATGGCACTG
GCTTGGTGCGCTATGATCTGAGGCGGGAACCCATTACCTCCACCAAAGAG
TCCATCCGCTTCCGCTTCAAGACGGCCTTTGCCAACGGAGTGATGATGTA
TTCGCGTGGCACACAAGGGGATTACTATGCCCTGCAGCTTAAAGACAACA
AAATGGTGCTGAATTTGGATTTGGGATCGCGGGTGATGACCTCCTTATCG
GTGGGCAGCCTGCTGGATGATAATGTGTGGCATGACGTTGTGATCTCAAG
GAATCAAAGGGACATAATCTTCTCAGTGGATCGTGTCATCGTAGGAGGAC
GCATCCAAGGCGAGTTCACACGACTGATTCTTAATAGGGAGCTGTATCTA
GTGGTGGTGCCCAACGTACAGAGGGCCATGATGTCCACAAAATTTCTCGG
CTGCTAGAAAACATCTACTTATTCGACACTTTATTCGAGTGATGAAAGAA
CGCACTGAACTGGGAGAGGATATCTCGTATGTAAGGTAACCGAATCTACG
CGGTTCACTCC
FMO11256.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:25:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nrx-IV-RB | 4940 | CG6827-RB | 337..1413 | 9..1076 | 5000 | 98.2 | Plus |
| Nrx-IV-RA | 4940 | CG6827-RA | 755..1413 | 427..1076 | 2910 | 97.1 | Plus |
| Nrx-IV-RA | 4940 | CG6827-RA | 337..559 | 9..231 | 1115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:25:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12152380..12152886 | 571..1069 | 1995 | 95.7 | Plus |
| 3L | 28110227 | 3L | 12151210..12151407 | 231..428 | 990 | 100 | Plus |
| 3L | 28110227 | 3L | 12152175..12152318 | 427..570 | 720 | 100 | Plus |
| 3L | 28110227 | 3L | 12148789..12148908 | 112..231 | 600 | 100 | Plus |
| 3L | 28110227 | 3L | 12146855..12146960 | 9..114 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:25:55 has no hits.
FMO11256.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:12:04 Download gff for
FMO11256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nrx-IV-RB | 281..1357 | 9..1076 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:21:41 Download gff for
FMO11256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nrx-IV-RB | 337..1413 | 9..1076 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:31 Download gff for
FMO11256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nrx-IV-RB | 337..1413 | 9..1076 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:31 Download gff for
FMO11256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12146855..12146960 | 9..114 | 100 | -> | Plus |
| 3L | 12148792..12148908 | 115..231 | 100 | -> | Plus |
| 3L | 12151211..12151407 | 232..428 | 100 | -> | Plus |
| 3L | 12152177..12152318 | 429..570 | 100 | -> | Plus |
| 3L | 12152380..12152894 | 571..1076 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:21:41 Download gff for
FMO11256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12145277..12145418 | 429..570 | 100 | -> | Plus |
| arm_3L | 12139955..12140060 | 9..114 | 100 | -> | Plus |
| arm_3L | 12141892..12142008 | 115..231 | 100 | -> | Plus |
| arm_3L | 12144311..12144507 | 232..428 | 100 | -> | Plus |
| arm_3L | 12145480..12145994 | 571..1076 | 96 | | Plus |
