FMO11257.5prime Sequence
443 bp (345 high quality bases) assembled on 2011-12-02
> FMO11257.5prime
CAGTCGACATGGTGAAAATGCTCGATCTGGACCGTCACGCAGAGTGCCCA
CTGTGGGCGGCACTGGCCTCCTCGGATGTCCCATGGACGGGAATGGACTA
CGCCTGCCTGAACGTGCTCAGTATCTACTGCAAAGTATTCGATAGGAAGG
AAATATACGATCTCATCGTGAGGAAAACCTGCCAGTCCTGCAAATGTCCT
CGCGAGGCGCATGCCATCTATCAGCAACAGACTACCAACGTGCATGAGCG
ACTCGGCTTCAAATTGGTCTCTCCGGCGGATTCGGGAGTGGGAGGCGCGG
GATCTGGGGCTTCACGGGGGTTCCGCCCGGAGTGCGTGCCTTCCTCGCGC
ATCAACCGCTAATTTCAAGCAGCTGCCCCGAAGAAATTGGTACCCCGGCT
GGGGCAGCAAAGCGCCTGCACCCGGGAACCAAAAATTTTTTTA
FMO11257.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:26:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lmpt-RD | 2860 | CG32171-RD | 291..703 | 9..427 | 1810 | 96.7 | Plus |
| Lmpt-RH | 2804 | CG32171-RH | 235..647 | 9..427 | 1810 | 96.7 | Plus |
| Lmpt-RM | 2905 | CG42679-RM | 497..748 | 170..427 | 1005 | 94.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:26:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16896436..16896600 | 9..173 | 825 | 100 | Plus |
| 3L | 28110227 | 3L | 16896802..16897052 | 171..427 | 820 | 93.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:26:05 has no hits.
FMO11257.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:12:04 Download gff for
FMO11257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lmpt-RD | 283..701 | 1..427 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:21:45 Download gff for
FMO11257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lmpt-RH | 229..647 | 1..427 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:35 Download gff for
FMO11257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lmpt-RH | 229..647 | 1..427 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:35 Download gff for
FMO11257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16896430..16896599 | 1..172 | 97 | -> | Plus |
| 3L | 16896804..16897052 | 173..427 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:21:45 Download gff for
FMO11257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16889530..16889699 | 1..172 | 97 | -> | Plus |
| arm_3L | 16889904..16890152 | 173..427 | 94 | | Plus |
