FMO11258.5prime Sequence
1028 bp (982 high quality bases) assembled on 2011-12-02
> FMO11258.5prime
CAGTCGACATGCTACGGCTGTGGGCCTGCCTGCTCCTCCTGGGATCAATC
CAGATCCAGGCGGTTCCATTCTACGGCGATTCAAGTTCTGAAGAGGTTGC
CGAATTCGATGACTCCTCGGATTCCACACACGAGTCCTCAGATAACTCCA
GCGGATACGACACCGAGTTCGTGCCACTGGAGCACCAGCAGCAGCCGCAG
GGACGCCAGGAGACGGCGGCCACCGTTCCCGCTCAAACCCCCAGCGGTGT
GGAGCAGAAGCCGTTCAATGTGGACACCATCACCACGGATGTGAATTCCC
CAAATCCGGCCATCTTCTTCCAGCAATCGTTCCCCTTCTTTGGCAATGAG
TTCTTCAATTCGTTCGGAGGCTTTGGCTTTGGAGCTGCCCAGGAGCCCTG
GTGGAAGGGACCCAATGTGTGCACCGAAAAGGAGGAAGACGAGACTGTGG
CCAGTGAAACGGAGGCAGAAGAAACCGTGGACACCTTTGGCCAGGAACGT
GATGGCGTTACCAACGTGGTGCGATCCCCACTCTTTGGCCAGTTCCAGTT
CAGCGTTAACTCCTGCGCCGAGAAGCCCAACAAGCACGTCTGCACCAAGA
TCGTGAATCAAAATGGCAAGAAGAAAACGCTGACGCTGACCCGCCAGTGC
TGCTATGGATATGGACGCCCCAGAAACGCTGACTTCACAACGCCCTGCGA
GAAGATCGACATCAAGGACGTGGAGGCCACGGCCAGTGACATGGGTGCCA
AGCAGTTCCTGGAGAGTGCACGCACCGCCCGGTGAGCTGGCCGATATGCT
CGGAGCAGCAGTGGCAAGAACGTGACCCTCTTCGTGCCCAACGACGCCGC
CTTCATGGAGTACCGTGGTCATCATCAGCAGAGATAATGTGGAAGATGCC
AGGCCGAGGCTTCAAGCCATCATCTACAAACTGCACGCTGTTCTCGGCGA
AGTTCAGCTGAGATGTGCCAAGGAAAGCTTCTGCGACGAGCTGCCTGACC
AGAGATCCGCATCAACAGCTTACCAGCT
FMO11258.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:24:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mfas-RO | 2764 | CG3359-RO | 106..1138 | 7..1028 | 4770 | 98.4 | Plus |
| mfas-RE | 2786 | CG3359-RE | 128..1160 | 7..1028 | 4770 | 98.4 | Plus |
| mfas-RM | 2789 | CG3359-RM | 128..1163 | 7..1028 | 4730 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:24:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11986841..11987120 | 881..602 | 1290 | 98.9 | Minus |
| 3R | 32079331 | 3R | 11987185..11987377 | 601..409 | 965 | 100 | Minus |
| 3R | 32079331 | 3R | 11988658..11988799 | 409..268 | 710 | 100 | Minus |
| 3R | 32079331 | 3R | 11989210..11989328 | 267..149 | 595 | 100 | Minus |
| 3R | 32079331 | 3R | 11992742..11992814 | 79..7 | 365 | 100 | Minus |
| 3R | 32079331 | 3R | 11992072..11992143 | 151..80 | 360 | 100 | Minus |
| 3R | 32079331 | 3R | 11986695..11986772 | 960..886 | 240 | 96.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:24:28 has no hits.
FMO11258.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:57 Download gff for
FMO11258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mfas-RO | 103..1138 | 1..1028 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:20:55 Download gff for
FMO11258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mfas-RE | 125..1160 | 1..1028 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:58 Download gff for
FMO11258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mfas-RE | 125..1160 | 1..1028 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:58 Download gff for
FMO11258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11986621..11986772 | 886..1028 | 92 | <- | Minus |
| 3R | 11986835..11987120 | 602..885 | 98 | <- | Minus |
| 3R | 11987185..11987376 | 410..601 | 100 | <- | Minus |
| 3R | 11988658..11988799 | 268..409 | 100 | <- | Minus |
| 3R | 11989210..11989325 | 152..267 | 100 | <- | Minus |
| 3R | 11992072..11992143 | 80..151 | 100 | <- | Minus |
| 3R | 11992742..11992817 | 1..79 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:20:55 Download gff for
FMO11258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7812343..7812494 | 886..1028 | 92 | <- | Minus |
| arm_3R | 7812557..7812842 | 602..885 | 98 | <- | Minus |
| arm_3R | 7812907..7813098 | 410..601 | 100 | <- | Minus |
| arm_3R | 7814380..7814521 | 268..409 | 100 | <- | Minus |
| arm_3R | 7814932..7815047 | 152..267 | 100 | <- | Minus |
| arm_3R | 7817794..7817865 | 80..151 | 100 | <- | Minus |
| arm_3R | 7818464..7818539 | 1..79 | 94 | | Minus |
