FMO11259.5prime Sequence
1142 bp (1004 high quality bases) assembled on 2011-12-02
> FMO11259.5prime
CAGTCGACATGGTCAAAACTGCCACCTTTTGGCGTTGCCTTTTCTTTACA
TTATGTGGAAGCTTTTTGACGGTTACTCAGGCCAAAGCAGCAACTAGCAA
CGCAAGCAGTTTTTTGGAGGTGTCGCTGCGCTATTTTGATGAGCAGCTTC
TGCTGGACATCCTGCCACGCGCTCAGTGTCCTGGCGAGGATGAAGGATCT
CCGATGGACGAGTTCGCCGACCTGTTTACGGTGGATCAACTTCGCCAGGG
ATGGGTGGTGCTGCACGTCTTCGCTGCGGTTTACTTCTTTATCCTGCTGG
CCATCATTTGCAACGACTACTTCCTGCCGACTGTGGAGTGCATCTGCGAG
GACTTGCACCTTTCGAAGGACGTGGCAGCGGCCACTTTCATGGCTACCGC
CACCTCCATGCCCGAATTCTTTACGAACACGATCAGCACGTTGATTCTGG
AGTCAGATATGGGCCTGGGCACGATTATCGGCTCGTTAATGTTCAACACA
TTGGGAGTGGCCGGCCTAGCTGCGCTCGCCATCGATAAGCCGGTGCAACT
GGACTGGTGGCCCATAGCTCGCGACTGCTTTATTTATGTCTTCAACACGA
TTATCCTGCTGGTCTTGGCCTGGAGTGGAAGCATTAGTTTCACGGAGTCC
TGCATCATGATGGGATTCCTCATCCTTTACTACCTTATCACGTTTAACAA
CAACAAGTTTATGCCCGCCATCCGGGTGTTTATCGAGGATCGTATGAACT
GCTGCTTCTCCACGCGATATGATCTAACGGAGCCTCCAGAGAACAGTGCC
AAGGCGCAGCTTCCACTCAAAAAAGATCCTCTGTCCGGCGATGGCTCTCT
TTGTTCTTAATCTTCCCGAAAACACCTCGTCCATGTCTTCCACCGCCAAC
CTCACACGTAACAAGCAATCTTACGACGAGGACGACGTCGCAAACGTATT
GCCCGGGAGCATATACGCTTACCCGCGTGACGCATCCGGTTGGATGCAAT
TCTGGTGATCTTTCGTCTTCCCCATTAAGGTTAGGCTATCCTATTGATTC
CGGCACCGGATGGAAGTACGGCCGACGTGTACCATTTATCTTTTTATCTA
GGTGACACTTGGTGCTTGGCGTGAACGCGCTACCTTAATGAT
FMO11259.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:24:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17167-RD | 2506 | CG17167-RD | 294..1420 | 5..1137 | 5095 | 97.5 | Plus |
| CG17167-RC | 2503 | CG17167-RC | 294..1417 | 5..1137 | 5040 | 97.2 | Plus |
| CG17167-RF | 2597 | CG17167-RF | 89..1132 | 88..1137 | 4695 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:24:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 23074762..23075070 | 231..539 | 1545 | 100 | Plus |
| X | 23542271 | X | 23077856..23078089 | 538..771 | 1170 | 100 | Plus |
| X | 23542271 | X | 23073102..23073247 | 86..231 | 730 | 100 | Plus |
| X | 23542271 | X | 23078159..23078304 | 771..917 | 685 | 99.3 | Plus |
| X | 23542271 | X | 23078773..23078891 | 923..1041 | 475 | 93.3 | Plus |
| X | 23542271 | X | 23068594..23068676 | 5..87 | 400 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:24:37 has no hits.
FMO11259.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:58 Download gff for
FMO11259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17167-RD | 287..1343 | 1..1057 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:21:00 Download gff for
FMO11259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17167-RD | 289..1345 | 1..1057 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:02 Download gff for
FMO11259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17167-RD | 289..1345 | 1..1057 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:02 Download gff for
FMO11259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 23068589..23068676 | 1..87 | 95 | -> | Plus |
| X | 23073104..23073247 | 88..231 | 100 | -> | Plus |
| X | 23074763..23075070 | 232..539 | 100 | -> | Plus |
| X | 23077858..23078089 | 540..771 | 100 | -> | Plus |
| X | 23078160..23078306 | 772..920 | 98 | -> | Plus |
| X | 23078770..23078907 | 921..1057 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:21:00 Download gff for
FMO11259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| XHet | 56978..57124 | 772..920 | 98 | -> | Plus |
| XHet | 57588..57725 | 921..1057 | 92 | | Plus |
| XHet | 47407..47494 | 1..87 | 95 | -> | Plus |
| XHet | 51922..52065 | 88..231 | 100 | -> | Plus |
| XHet | 53581..53888 | 232..539 | 100 | -> | Plus |
| XHet | 56676..56907 | 540..771 | 100 | -> | Plus |
