FMO11260.5prime Sequence
1032 bp (1005 high quality bases) assembled on 2011-12-02
> FMO11260.5prime
CAGTCGACATGGTGCTCAATCTGCTGTTCATAACCACTGTGATCAAGTCC
ACATTTGGCGTGGTGACCACGGGACTCTGGCTAATTCCACTGATGCTGGC
CGCCATCACATACTATCGCTATGATGCCGTAGATCCCGAGTCGAGGCCGC
TAGATCAACTGAATTTGTATCCAGAGTACGATTTTATAGTGGTGGGCAGT
GGTTCGGCCGGAGCTGTGGTGGCCAATCGTTTGAGCGAGGTGAGGAAATG
GAAAGTACTGCTGATCGAAGCCGGTCCAGATGAAAACGAGATCTCTGATG
TACCATCGCTGGCGGCCTATTTGCAATTGAGCAAACTGGATTGGGCCTAC
AAGACGGAACCCTCGACGAAGGCGTGTTTGGGAATGCAGAACAATCGTTG
CAATTGGCCAAGAGGACGAGTCTTGGGCGGCAGTTCGGTGCTCAACTATA
TGCTCTATGTGCGTGGCAATCGCCATGATTACGATCACTGGGCATCGTTG
GGCAATCCAGGCTGGGATTACGACAATGTGTTGCGTTATTTTAAGAAATC
GGAGGATAATCGTAATCCCTATTTGGCCAACAACAAGTATCATGGTCGCG
GAGGACTGCTAACGGTTCAGGAATCACCGTGGCATTCACCTTTGGTTGCC
GCCTTTGTGGAAGCCGGTACTCAGTTGGGCTATGATAATCGTGACATTAA
TGGCGCCAAACAGGCGGGCTTTATGATTGCCCAAGAACGATACGTCGTGG
TTTCGAGATGTTCCACCGCCAAAGCATTTCTGCGACCCATACGCATGCGA
AGAATTTCCATCTGTCGATGAACTCACATGTGACCAGGGTCATCATTGAA
CCGGGAACGATGAGGGCACAGGCCGTGAAATTTGTGAAACATGGCCAAAG
TGTATTAGGATAGCGGCCAGGAGGGAGTTATCATCTCAGCTGGTGCAATC
ATACCCCGCAGCTAATGATGCTCTCTGGTTTGGGACCCACGAAAAACATC
TGGAAAAGCATGGCATTCAAGTGTTTGCAGGA
FMO11260.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:24:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9518-RC | 3952 | CG9518-RC | 944..1961 | 7..1025 | 4830 | 98.7 | Plus |
| CG9518-RB | 3897 | CG9518-RB | 889..1906 | 7..1025 | 4830 | 98.7 | Plus |
| CG9518-RA | 3679 | CG9518-RA | 671..1688 | 7..1025 | 4830 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:24:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14864980..14865997 | 1025..7 | 4605 | 98.7 | Minus |
| X | 23542271 | X | 14855774..14855907 | 523..390 | 235 | 78.4 | Minus |
| X | 23542271 | X | 14877155..14877305 | 325..175 | 215 | 76.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:24:48 has no hits.
FMO11260.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:58 Download gff for
FMO11260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9518-RA | 658..1686 | 1..1031 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:21:06 Download gff for
FMO11260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9518-RA | 665..1693 | 1..1031 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:05 Download gff for
FMO11260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9518-RA | 665..1693 | 1..1031 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:05 Download gff for
FMO11260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14864975..14866003 | 1..1031 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:21:06 Download gff for
FMO11260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14759008..14760036 | 1..1031 | 98 | | Minus |
