FMO11261.5prime Sequence
1125 bp (1012 high quality bases) assembled on 2011-12-02
> FMO11261.5prime
CAGTCGACATGGAAACAGCGATGGATGTGGTGTGTGTAATGGATACGGCG
GTGGGCGACCATCTGGAGGACCGCCAGTGTGCGCTGGAGGAGATCAAGCA
GGCAGTGCAGTCGGCGGGCGCCAACTTTCAGCGGGTTCAGTTCGAGCGCC
TGGACTTCGGCGAGACGAATGTGCTGGAGACGTTTTACAACGCCGATGTG
GCCATTATCGACCTGAGCATTCTCACCCAGCAGCGGCCGCTTTCCTATCA
CTACGGCGTTAGGGAGAGCTTCGGGATGAAGGAGAACATCCTCACCTACA
ACGACATCGATTCCAAGCAGACGCTCAGTCTCAAGCTCTCGTGTGCCAAC
TACCTGTTTCTCAGCTACAAGCGGAATGCGGAGACCAATTCCTGCCACCT
GACCAGCCAGCCCAACAGCGGCAACAACAGCAAGGAACCCAATGCCGAAG
GACGAGTGCCCACTTTGCAGTGGCGCCTCAAGCGAAAGCTGCAAGATGTT
GAGATCCAGTCGAAAGCCCACATGCGTGAGAAATTTCTGAGTGACATGCG
AACGGCGCGGGACACGTACGCCACCAACGGCGCCAAGCTGCAGAGTATAT
TGCACGAGATGCGAAAGCGGCTGGACGATCCGCATGTCCTGTCTGGCGAA
GTGGTACACAGTTTCATGTGCTCGCTGAGGGATGTGCAGGACTACGATGC
CATGGTGCGACTGGTCAATGACCTGAAGAACATACCCAACACCCGGAAGT
ACGTGGAGACGGGCAACATGAGTTTCCTGTACGCCTTCGCCCTGAACCGA
AGAAATCGAAAGGGAGACCGTGAAAAGGCTCTGGAATCTTCGCTGAAAGC
GCTGGAAAAGAAGGAGAACCACTTTCCGGACATGCTCTGCCTGTGCGGCC
GCATCTACAAGGACATCTTTGTGGATCCGAATATACCACGAGACGCCACC
AGTTTGGCGCACGCCATCAGTGTACCGCCAAGCTTTTGAAGTGCAGCCGA
ATGAGTATGCAGGCATTCAATCTGCTACTCTGCTGGTATCGAGGGCAAGG
GGTTTACACTGCGAAGAGTGGCAGCCACATTCGGCATGACCCTTAACCAT
TAATTCGGTTAAAAGCAGCTATCTC
FMO11261.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:26:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pk92B-RC | 4596 | CG4720-RC | 194..1300 | 9..1115 | 4985 | 97.3 | Plus |
| Pk92B-RB | 5168 | CG4720-RB | 1091..1872 | 334..1115 | 3360 | 96.2 | Plus |
| Pk92B-RB | 5168 | CG4720-RB | 194..520 | 9..335 | 1635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:26:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19881484..19882026 | 515..1057 | 2220 | 95.4 | Plus |
| 3R | 32079331 | 3R | 19880113..19880310 | 138..335 | 990 | 100 | Plus |
| 3R | 32079331 | 3R | 19880881..19881061 | 334..514 | 905 | 100 | Plus |
| 3R | 32079331 | 3R | 19879912..19880043 | 9..140 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:26:38 has no hits.
FMO11261.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:12:07 Download gff for
FMO11261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pk92B-RC | 189..1252 | 1..1066 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:21:59 Download gff for
FMO11261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pk92B-RC | 189..1252 | 1..1066 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:48 Download gff for
FMO11261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pk92B-RC | 189..1252 | 1..1066 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:48 Download gff for
FMO11261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19879907..19880043 | 1..140 | 97 | -> | Plus |
| 3R | 19880116..19880310 | 141..335 | 100 | -> | Plus |
| 3R | 19880883..19881061 | 336..514 | 100 | -> | Plus |
| 3R | 19881484..19882036 | 515..1066 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:21:59 Download gff for
FMO11261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15706605..15706783 | 336..514 | 100 | -> | Plus |
| arm_3R | 15705629..15705765 | 1..140 | 97 | -> | Plus |
| arm_3R | 15705838..15706032 | 141..335 | 100 | -> | Plus |
| arm_3R | 15707206..15707758 | 515..1066 | 96 | | Plus |
