FMO11264.5prime Sequence
1063 bp (976 high quality bases) assembled on 2011-12-02
> FMO11264.5prime
CAGTCGACATGTTGGCAATGAAGGATAAGCCTTGGCTGCTGCTATTTGGC
CTATTGGCCGCATTAAGCTGCCTAGCCAGCTTTGGAGATGCCGCCTACCC
CTATTATGGCACCAAGATCGGAGCCCTGACCCGCCTGCACCACGGTGTCT
CCGGCGATGTGTACGCCGTCGATTCCCGCACCATCTTCATCAAGAAGTTC
AATTACGACGGCGAGGCGCCAGCTGCCTACTTCTATGTGGGGAATACTGC
ACGGCCAAGTAATGAAGGTGCCGCCCGGCTGAGGGACGAAAGGGGCGGGA
CCGCCTCCCTGACCCGCCGTTACAGGAACAAGGACGTCACACTGTCGCTG
CCCGAGGGCAAAACACTGCGCGACATCAAATGGTTCTCGGTGTGGTGCGA
TGAGTTCGCGGTGAATTTCGGTGACGTTTCCATTCCGCCCAACTTGGACT
TCCCGCGGCCACAGAAGATCAGCGCTCTGAGGGGCGTCCATGGTGTCTCC
TCCGACAACATTGTCATCGTGGACGCCCAAACGCTGCTGGTGCCCAACTT
TAGCTACGACGGAGAGGCGCCAGATGCCAAATTCTGGGTGGGTCGTGGCC
AGCGGCCCACTTCCGACGGCCTGAGGATTCCGGACGAGAATGGCAAGGAG
AACCCGCTGCGTCGCTACGAGCGCAAGACAATCGTGCTGACCCTGCCCGA
GGACCTGACCATCTTCGACATTGGTCACTTTGGCGTTTGGTGCGAGGCCT
TCACCGTGGATTTTTGGCCACGTTCGCCTGCCGGAGGGCCTGAATGTGCC
GCCCTCCCTGAAGATGCTCGGATTCAGTCCTCAGTCGAAGCTCAACTGCG
AGGTGCTCTACGACGATCTGGCATTCGAGGTTCGCTGGGCCGTGCCCGGC
GAGGAGCATCGTGGTCCAATTTGGTGGCCAAATGAACCGAACCACTACAT
GTCTTTCGGAATTTCGCCAAATAAGACATTAGCCCAGATGATTGCTGCGG
ATGCATGGTGGCCTGGGTGAATCCCCAAGAACCGAAACGGATTTGCAACC
GAACATACTTCCT
FMO11264.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:26:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Skeletor-RE | 5035 | CG43161-RE | 299..1351 | 8..1063 | 4900 | 98.1 | Plus |
| Skeletor-RD | 5035 | CG43161-RD | 299..1351 | 8..1063 | 4900 | 98.1 | Plus |
| Skeletor-RC | 4905 | CG43161-RC | 299..1351 | 8..1063 | 4900 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:26:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10689261..10689764 | 70..573 | 2520 | 100 | Plus |
| 3R | 32079331 | 3R | 10690240..10690502 | 571..834 | 1255 | 99.2 | Plus |
| 3R | 32079331 | 3R | 10691347..10691446 | 832..933 | 380 | 96.1 | Plus |
| 3R | 32079331 | 3R | 10692345..10692460 | 934..1049 | 320 | 88.9 | Plus |
| 3R | 32079331 | 3R | 10687241..10687303 | 8..70 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:26:52 has no hits.
FMO11264.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:12:08 Download gff for
FMO11264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Skeletor-RA | 291..1351 | 1..1063 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:22:06 Download gff for
FMO11264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Skeletor-RC | 291..1351 | 1..1063 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:56 Download gff for
FMO11264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Skeletor-RC | 291..1351 | 1..1063 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:56 Download gff for
FMO11264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10691350..10691449 | 835..934 | 94 | -> | Plus |
| 3R | 10687233..10687302 | 1..69 | 94 | -> | Plus |
| 3R | 10689261..10689764 | 70..573 | 100 | -> | Plus |
| 3R | 10690243..10690502 | 574..834 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:22:06 Download gff for
FMO11264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6512955..6513024 | 1..69 | 94 | -> | Plus |
| arm_3R | 6514983..6515486 | 70..573 | 100 | -> | Plus |
| arm_3R | 6515965..6516224 | 574..834 | 99 | -> | Plus |
| arm_3R | 6517072..6517171 | 835..934 | 94 | -> | Plus |
