FMO11268.5prime Sequence
1101 bp (1019 high quality bases) assembled on 2011-12-02
> FMO11268.5prime
CAGTCGACATGTGTTTGTTTTACAATCGTCGCCTCTTTGTGATTCAATTG
ATTGAGATCCTACTGCTGCTGCTAACCGACCACAATGGACGACTGACACT
AACCAAGGAGTCGACAACAGTTGCTGCCGCCGTCGCCCAACCGAAGAACT
CAACAGCACTCCAGCCATATCTGCAGATCCAGAAGCACGCCGTCACAAGA
CTGACCATCAGCAAGCCCCACTCCCCGTACTATTTGCCATGCATACCCAT
CCTAACGCCCTACAATCACGATCAGGACAACCAGCCCATCTACTGCAGTT
GGTATCGAAATGACGTGGTTGTCGAACAAGTATCATATCGCAAAAATGAC
TTCTTTATCTATGACAATGGTACGCTGCGTCTGCCCACCAATGAAAAGGC
AAGCGGCGAATATTACTGCAAGATCGAGTGGGATGAGTCAGCGGTGATAT
CCGACAGAATCACAGTCGAGTATCCTGTGCTCAAGCGTTTATTTCCTGGC
CAACAGCAAGCGGCCAATATCAGTGCGTTGGAAAACAAACCGCTCGTGCT
GAGCTGCCCCTTTCTGAGTGTTCCAGCTGCGCGTTTTAGCTGGTACTTTG
GCAACGATTCCCTGACCAATGACAACAGTGCTCTCATCCTGACCAATGGC
ACCTTAATATTGAGGCATTTGCGTCTCGAACAGGCGGGTAAATATAAGTG
CGTGGCGCAGAACACATTTGCCAGCAAGACGCACCGCCAGTTCATTTGGC
AACTGCAAGTGGAGCCGAACGATGCTACATTTTATCCCAAAAACGAGGCG
GGAATTACGGAGACAGCCGTTTCGGAGGCCCAACTACTGCCGGCGTTTCA
GAATGCAACGGTTTTTGTGCCCGCCGGCGGATCCGTGCTGCTACATGCCA
CGCGGTGGCAGACTTTGTGCCAATTGTGTGGTACCTCCAGCCGCCAAACA
CAGATGGTCGCCTGAGCACATAGTGTAGCCTATTCATCACGATGCTAGCA
TAGCCGCATGAAGACGCTACAGTTTTATAACCCCACTGAAACGCAACTTC
AGTGATGTGGACACCTCGAGATGTGATCGCGGCCCGTCAGGGGTGGTAAT
T
FMO11268.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:27:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
plum-RD | 7490 | CG6490-RD | 693..1742 | 9..1046 | 4930 | 98.7 | Plus |
plum-RC | 6030 | CG6490-RC | 258..1307 | 9..1046 | 4930 | 98.7 | Plus |
plum-RB | 6181 | CG6490-RB | 409..1458 | 9..1046 | 4930 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:27:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26476107..26476458 | 1038..698 | 1255 | 95.7 | Minus |
3R | 32079331 | 3R | 26477382..26477583 | 477..276 | 1010 | 100 | Minus |
3R | 32079331 | 3R | 26477649..26477807 | 276..118 | 795 | 100 | Minus |
3R | 32079331 | 3R | 26477150..26477301 | 628..477 | 760 | 100 | Minus |
3R | 32079331 | 3R | 26532113..26532224 | 120..9 | 560 | 100 | Minus |
3R | 32079331 | 3R | 26476920..26476994 | 700..626 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:27:27 has no hits.
FMO11268.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:12:11 Download gff for
FMO11268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6490-RD | 693..1756 | 9..1056 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:22:25 Download gff for
FMO11268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6490-RB | 409..1472 | 9..1056 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:14 Download gff for
FMO11268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
plum-RB | 409..1472 | 9..1056 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:14 Download gff for
FMO11268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26476102..26476458 | 698..1042 | 96 | <- | Minus |
3R | 26476923..26476991 | 629..697 | 100 | <- | Minus |
3R | 26477150..26477300 | 478..628 | 100 | <- | Minus |
3R | 26477382..26477582 | 277..477 | 100 | <- | Minus |
3R | 26477649..26477804 | 121..276 | 100 | <- | Minus |
3R | 26532113..26532224 | 9..120 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:22:25 Download gff for
FMO11268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22302645..22302713 | 629..697 | 100 | <- | Minus |
arm_3R | 22302872..22303022 | 478..628 | 100 | <- | Minus |
arm_3R | 22303371..22303526 | 121..276 | 100 | <- | Minus |
arm_3R | 22357835..22357946 | 9..120 | 100 | | Minus |
arm_3R | 22301824..22302180 | 698..1042 | 96 | <- | Minus |
arm_3R | 22303104..22303304 | 277..477 | 100 | <- | Minus |