Clone FMO11268 Report

Search the DGRC for FMO11268

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:112
Well:68
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG6490-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11268.5prime Sequence

1101 bp (1019 high quality bases) assembled on 2011-12-02

> FMO11268.5prime
CAGTCGACATGTGTTTGTTTTACAATCGTCGCCTCTTTGTGATTCAATTG
ATTGAGATCCTACTGCTGCTGCTAACCGACCACAATGGACGACTGACACT
AACCAAGGAGTCGACAACAGTTGCTGCCGCCGTCGCCCAACCGAAGAACT
CAACAGCACTCCAGCCATATCTGCAGATCCAGAAGCACGCCGTCACAAGA
CTGACCATCAGCAAGCCCCACTCCCCGTACTATTTGCCATGCATACCCAT
CCTAACGCCCTACAATCACGATCAGGACAACCAGCCCATCTACTGCAGTT
GGTATCGAAATGACGTGGTTGTCGAACAAGTATCATATCGCAAAAATGAC
TTCTTTATCTATGACAATGGTACGCTGCGTCTGCCCACCAATGAAAAGGC
AAGCGGCGAATATTACTGCAAGATCGAGTGGGATGAGTCAGCGGTGATAT
CCGACAGAATCACAGTCGAGTATCCTGTGCTCAAGCGTTTATTTCCTGGC
CAACAGCAAGCGGCCAATATCAGTGCGTTGGAAAACAAACCGCTCGTGCT
GAGCTGCCCCTTTCTGAGTGTTCCAGCTGCGCGTTTTAGCTGGTACTTTG
GCAACGATTCCCTGACCAATGACAACAGTGCTCTCATCCTGACCAATGGC
ACCTTAATATTGAGGCATTTGCGTCTCGAACAGGCGGGTAAATATAAGTG
CGTGGCGCAGAACACATTTGCCAGCAAGACGCACCGCCAGTTCATTTGGC
AACTGCAAGTGGAGCCGAACGATGCTACATTTTATCCCAAAAACGAGGCG
GGAATTACGGAGACAGCCGTTTCGGAGGCCCAACTACTGCCGGCGTTTCA
GAATGCAACGGTTTTTGTGCCCGCCGGCGGATCCGTGCTGCTACATGCCA
CGCGGTGGCAGACTTTGTGCCAATTGTGTGGTACCTCCAGCCGCCAAACA
CAGATGGTCGCCTGAGCACATAGTGTAGCCTATTCATCACGATGCTAGCA
TAGCCGCATGAAGACGCTACAGTTTTATAACCCCACTGAAACGCAACTTC
AGTGATGTGGACACCTCGAGATGTGATCGCGGCCCGTCAGGGGTGGTAAT
T

FMO11268.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:27:28
Subject Length Description Subject Range Query Range Score Percent Strand
plum-RD 7490 CG6490-RD 693..1742 9..1046 4930 98.7 Plus
plum-RC 6030 CG6490-RC 258..1307 9..1046 4930 98.7 Plus
plum-RB 6181 CG6490-RB 409..1458 9..1046 4930 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:27:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26476107..26476458 1038..698 1255 95.7 Minus
3R 32079331 3R 26477382..26477583 477..276 1010 100 Minus
3R 32079331 3R 26477649..26477807 276..118 795 100 Minus
3R 32079331 3R 26477150..26477301 628..477 760 100 Minus
3R 32079331 3R 26532113..26532224 120..9 560 100 Minus
3R 32079331 3R 26476920..26476994 700..626 375 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:27:27 has no hits.

FMO11268.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:12:11 Download gff for FMO11268.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6490-RD 693..1756 9..1056 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:22:25 Download gff for FMO11268.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6490-RB 409..1472 9..1056 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:14 Download gff for FMO11268.5prime
Subject Subject Range Query Range Percent Splice Strand
plum-RB 409..1472 9..1056 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:14 Download gff for FMO11268.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26476102..26476458 698..1042 96 <- Minus
3R 26476923..26476991 629..697 100 <- Minus
3R 26477150..26477300 478..628 100 <- Minus
3R 26477382..26477582 277..477 100 <- Minus
3R 26477649..26477804 121..276 100 <- Minus
3R 26532113..26532224 9..120 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:22:25 Download gff for FMO11268.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22302645..22302713 629..697 100 <- Minus
arm_3R 22302872..22303022 478..628 100 <- Minus
arm_3R 22303371..22303526 121..276 100 <- Minus
arm_3R 22357835..22357946 9..120 100   Minus
arm_3R 22301824..22302180 698..1042 96 <- Minus
arm_3R 22303104..22303304 277..477 100 <- Minus