FMO11271.5prime Sequence
1132 bp (994 high quality bases) assembled on 2011-12-02
> FMO11271.5prime
CAGTCGACATGGCATCCCTCCATCAGAAGCGTCCCAGCATAAGTAACTGG
TTCTCCTCGCTTCGTCGGCAGCCCAAAAACAAGAAGTGCTCCCCCGGCTT
GGGAGGAAGTGAAAGTGTTGGCAGAAAGCAGCCATTGCAGAGGAGCTGCC
TTGACCTATCCACGACGCGAGTTGGTTGCGATGGTTGTGTAAGTTTGGAG
TTCTTTCAATCGGAATCCCCTGAAAGTCGGCGAAGCAACAGCACTTTCTA
TGTCAACACCCAAAATGTATCGTCTGCTGTTTTTAAAGACAATCGTCAGC
CTCTATTGGAAAGGGGCAGCGGTAGTGATAGTAGCCCTAGCAGCGTTTGC
GTTCGATGCTCATGCAATTCGATAACGAAAAGCGGGGACAGAAATGAAAC
ACCTACAATGGCCACGCCTAAGTCGGACATTAAGATCGCGCTGAAACCTC
CACCCAAGCCCCGCTCCCCTTCCATGGCTCCCTACACTAGTGTGGCTACA
TATAACATCACGAAATTAGCGCCGGACAGCCCACCCCCCGCCAGCCCCAC
ATTAAGCACTCAAACCGTAAATTGCAGCGATGTAACCACGAAGGTCACAG
AGGTACAGCGCCTACCCTGCGATGAACCCAACACTGAACTCATAAGCAAG
CGAACGGAGTACAAGCACACAACCATCACAACAACGACAAGAACATTAAT
TGTGTCGCGACCCGTGGGAACTGCTTTTAAATGAAAATGGCGAAATAATC
GCAAGGCGATCCCCCCGCAATCGCGCTCTAATTCCCTGGGCCGCATGCTT
GACGTGCAGAATGAAATTGGAACTGGCGGGTTGTTTATGGAAGCGGATCT
TTGTTCGAAAAACAGTTTACCGCCTCCACCCTATATCGACGATATGCGCT
TCATTGATGACCAGCTCCAACTCACAAAGTGGAGTCCGAGCGGACTTTAA
CATACACAAAACCAACAATTTTGTTCAAAGAATTATAACAACGACAGCAG
GCGGGGAGAGGCAGCATCGAATTTGGGGCCGAGAGTTGCCGCATGCTTCT
CGATCGAATTTACTTAAATACTGAACGAAGTGACCATCTAAGTCACTCCC
TCAAGGCGAACAATCAAGCAAATTTAAGAATA
FMO11271.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:26:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
step-RE | 4776 | CG11628-RE | 1051..2165 | 9..1129 | 4985 | 97.1 | Plus |
step-RD | 3095 | CG11628-RD | 583..1697 | 9..1129 | 4985 | 97.1 | Plus |
step-RC | 2834 | CG11628-RC | 322..1436 | 9..1129 | 4985 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:26:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21746176..21747255 | 1090..9 | 4740 | 97.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:26:17 has no hits.
FMO11271.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:12:06 Download gff for
FMO11271.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
step-RD | 575..1667 | 2..1099 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:21:51 Download gff for
FMO11271.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
step-RC | 316..1408 | 2..1099 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:41 Download gff for
FMO11271.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
step-RC | 316..1408 | 2..1099 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:41 Download gff for
FMO11271.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21746159..21747258 | 2..1111 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:21:51 Download gff for
FMO11271.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21746159..21747258 | 2..1111 | 96 | | Minus |