FMO11272.5prime Sequence
1132 bp (1006 high quality bases) assembled on 2011-12-02
> FMO11272.5prime
CAGTCGACATGTCCAAATATCTAAGCAGTCAGAGAGATGCCCTTTCCGCA
CCCGCGCTTCCAGTAAGCAGGGAAAACCGGGAGCCACCTAAATTCCAAGG
GCAACGCGAGCCACTGGTCTTTTTCATCATGCGACTGAACCTAAAAGCCG
TGCTGCTTGTCCTCACAGTGGCTGTGGTGGTAATCACTCTGGGCGTGTAT
ATGCGCTGCGCCGCCTTCTCCTTTTCGCCGGACTTTGTGCGTCCTCTGGA
CCGGTCCGCAAGGCAGTCCTCCAGCGGAGGAGAAGCTACAGCGCTGCACG
ACATTGAGTGCTCCATTAACCAGGAGTACACCGTGCACTGCAAGCGAGAC
GAGAACGCCAACGAGGTTTACGTTCCGTTTTCCTTCCTGCGTAACTACTT
CGACGTCAGTGGAGCAGTTTCCACCAACAGCAATGAGGTGGCCAAGTTCA
ACTGGGTGCACAGCACAGCCAAAGTTAACCTTCCCAGGGGAAAGTACGAT
GCGCGCGGCGTCTATATGTACTTTGAGAACTACAACGTGGAAGTGCGCGA
CCGGGTAAAGTGCATCAGTGCCGCGGAGGGCGTTCCAGTGAGCACGCAAT
GGGAGAAGCGTGGGTACTTTTACCCCACACAAATTGCCCAGTTCGCGTTG
TCGCACTACAGCAAGAACCTCACAGAGCCGGCACCCAGGGTTCGCGTGTT
GGAGGACGGCGACGGGAACCAGATGGAATGGAGTACGCCCAAGACCAGCA
ACATGACCCGCATCTGGCACCACAAGTTTAACACCAGTGTTGTCCAGTTC
GAGACGGCACCTGGTTACGAAGGCGTCATCAGCATTGCTCTAAACCAGAC
ATTGGATCTTCTGCTCAGCGTTGATCTGCTCCTGTAACCAATAGCAGTAG
TCTCATGATTACGTTCAGAATCGGGACACCCGTCACAACTACAGCCTGCA
CTACATACCCGCAGATCTGCTGCTGAGCGTGCAGATACAAACATCTACTA
CGGTCTGGAGCTCGCACTGAACAAGTGGCGCCACATCCATCGAGACCTGC
CCATTGACTTCAAAAGCATCATGGGTGACACGCCTCCGCCGCCTAAAAGA
ACCGGGCCTCGGATTCGGAAGTTAAATATCCA
FMO11272.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:26:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsepi-RB | 3048 | CG3194-RB | 332..1412 | 9..1080 | 5145 | 98.9 | Plus |
| Hsepi-RA | 3054 | CG3194-RA | 332..1418 | 9..1080 | 5075 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:26:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6671899..6672887 | 1080..101 | 4505 | 98.7 | Minus |
| 2R | 25286936 | 2R | 6672949..6673041 | 101..9 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:26:29 has no hits.
FMO11272.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:12:06 Download gff for
FMO11272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3194-RB | 298..1397 | 1..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:21:55 Download gff for
FMO11272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsepi-RB | 325..1424 | 1..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:44 Download gff for
FMO11272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsepi-RB | 325..1424 | 1..1092 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:44 Download gff for
FMO11272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6672949..6673048 | 1..101 | 97 | | Minus |
| 2R | 6671887..6672886 | 102..1092 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:21:55 Download gff for
FMO11272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2560454..2560553 | 1..101 | 97 | | Minus |
| arm_2R | 2559392..2560391 | 102..1092 | 98 | <- | Minus |
