FMO11274.5prime Sequence
1133 bp (1014 high quality bases) assembled on 2011-12-02
> FMO11274.5prime
CAGTCGACATGAAAAACCCAAATATCATGGAATGCGGCAATTCCTTAAAC
AACAACAACATTGGCGGCAATATCAACGGAAACGGAAATGGAAATGGCGG
AGTCAGCGAACAACGCCCCCTATCGGGCAAAGTCCATGCTGCATCTCCTC
CGCCCGTCGTCGGCAACAACAACAACAACAATAGTAATCTAATAGTCCGT
TACAACAAACTAAGCTCGGGCAGCTCCTCCGCGAGCTCATCGCCGCCACA
TCATCAGCAGCACTCGCCACCACCGTCGATGCACCACCAAAGCCATCCCA
ACCACCCACTCCAGCCGTCCTCCATGTCCACAAACATGGCCACAAATGGC
CATCAGTTGTATCCGGCGATAACGGCAACGTATTGGCTCCCGCCGCCGAA
TCCGGCGCCATATTTAGTTCCAGAACGTAAACTTTTCGTTGGCATGCTGA
ACAAAAAGTACACCGAGGCCGATGTGAGGCAGCTCTTCACGGGCCACGGA
ACCATCGAGGAGTGCACAGTGCTCCGGGATCAGGCTGGTCAGAGCAAGGG
CTGCGCCTTCGTCACATTCGCCACTAAGCAGAACGCCATTGGAGCTATAA
AGGCCCTCCATCAAAGTCAGACCATGGAAGGCTGTTCAGCTCCGCTGGTT
GTGAAATTCGCCGACACGCAAAAGGAAAAAGACCAAAAGAAGATGCAGCA
GATTCACGCATTCTGTGGCATCAATACGCCGAGCGGTGCGACAGCACGTG
CGGCCACGCCCACCATTAATGCCGCAACGGCTCTAATAGCTGCTCCGCCC
TCGGCGGGACGTACCAATCCGTCGATGGCGGCCGCACTGGCGGCAGTGCC
TCAGTTCAGCAGCTGGTTCTGCAGCAACGGCACCAACCACCCTCGTTCCC
CTGAATTCCACCACCGCCCTCAGTGCGTCCTTGACGCCCAATCTCCTAAC
CACCAATGCCGCCCCACCATGGGGCCTGCAGCTGCGGCCGCCTATTTGGG
GCAGATCCCGCCTGCCGCGGCCCACCTGCGCTGTACAACACTACCACGGA
ATACGGACTGGAATCCGTACATATCGTGCAGGACTAAAGTTCCACCACCA
ACCGGAAAACAGTGCCACAAGACCAGCCAAGTT
FMO11274.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:27:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bru-2-RJ | 3281 | CG43065-RJ | 360..1471 | 7..1116 | 5045 | 97.7 | Plus |
| bru-2-RH | 3190 | CG43065-RH | 269..1380 | 7..1116 | 5045 | 97.7 | Plus |
| bru-2-RL | 4177 | CG43065-RL | 1672..2367 | 423..1116 | 2965 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:27:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12373695..12374111 | 7..423 | 2085 | 100 | Plus |
| 2L | 23513712 | 2L | 12389188..12389614 | 601..1027 | 1775 | 97.4 | Plus |
| 2L | 23513712 | 2L | 12385556..12385741 | 418..603 | 930 | 100 | Plus |
| 2L | 23513712 | 2L | 12298556..12298724 | 412..580 | 260 | 76.9 | Plus |
Blast to na_te.dros performed 2014-11-27 00:27:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5606..5686 | 7..84 | 119 | 63 | Plus |
FMO11274.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:12:12 Download gff for
FMO11274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bru-2-RJ | 355..1482 | 1..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:22:38 Download gff for
FMO11274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bru-2-RH | 264..1391 | 1..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:19 Download gff for
FMO11274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bru-2-RH | 264..1391 | 1..1129 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:19 Download gff for
FMO11274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12373690..12374111 | 1..423 | 99 | -> | Plus |
| 2L | 12385562..12385740 | 424..602 | 100 | -> | Plus |
| 2L | 12389190..12389670 | 603..1081 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:22:38 Download gff for
FMO11274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12373690..12374111 | 1..423 | 99 | -> | Plus |
| arm_2L | 12385562..12385740 | 424..602 | 100 | -> | Plus |
| arm_2L | 12389190..12389670 | 603..1081 | 95 | -> | Plus |
