FMO11276.5prime Sequence
1116 bp (973 high quality bases) assembled on 2011-12-02
> FMO11276.5prime
CAGTCGACATGGTTCAGTTCCTGGGCAAACAGGGCACCGCGGGTGTTTTT
ATTTCATTTGGAATGCACAATCCTTTCCCAGAGCTCATTCACATGGTGAC
CCTGGACAAGACGGGCAAGAAGTCCTTCGGCATCTGCATAGTGCGCGGCG
AGGTGAAGGATTCGCCCAACACCAAGACCACCGGCATCTTCATCAAGGGC
ATTGTGCCCGACAGTCCCGCGCATCTGTGTGGTCGCCTAAAGGTTGGCGA
TCGGATCCTCTCGCTCAACGGAAAGGATGTGCGCAACTCCACCGAACAGG
CGGTCATCGATCTCATCAAGGAGGCGGACTTCAAGATCGAACTGGAGATT
CAGACCTTCGACAAGAGCGATGAGCAGCAGGCCAAGTCAGATCCGCGGAG
CAATGGCTACATGCAGGCCAAGAACAAGTTCAACCAGGAGCAGACCACCT
TCAACAATGCGTCCGGAGGTCAGGGAATGGGGCAAGGTCAGGGTCAGGGT
CAGGGAATGGCTGGCATGAACCGGCAGCAATCGATGCAGAAGCGGAATAC
CACATTCACGGCCTCGATGCGTCAGAAGCATAGTAACTACGCCGACGAGG
ATGACGAGGACACCCGGGACATGACCGGTCGCATTCGCACGGAGGCGGGT
TATGAGATCGATCGAGCATCCGCCGGTAATTGCAAACTCAACAAGCAGGA
AAAGGATCGCGACAAGGAGCAGAAGATGAATTTGGCTACACGATGGCTAA
GATCAACAAGCGGTACAACATGATGAAGGATCTGCGCAGGATCGAGGTCC
AGAGGGACGCCAGCAAGCCACTGGACTCGCACTCGCTGGCCACAAGACCG
CCAGAGATGGCCTGCTTTGTTGCCCGTGTGATCCCAACGGAGCATTGGGT
AGCGTGACATCAACCGGGCGACGAGATCGTCGAGGTCAACGGCAATGTGC
TGAAGATCGCTGCCACTTGAACGCCTCGCCGTGTTCCAGACGTGGAATGG
GGATAGCCTCCGTGATGATCACCTCCGCGAACGCCAGCCCAACGATGAGG
GCATTGGTGCGTTCAAGCCCCATTCAGAGGTCCCCACGCCGTCCTGAATG
AAACATAGGTTACCTC
FMO11276.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:28:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| inaD-RB | 2331 | CG3504-RB | 197..1261 | 9..1070 | 4825 | 97.7 | Plus |
| inaD-RA | 2295 | CG3504-RA | 233..1225 | 81..1070 | 4465 | 97.5 | Plus |
| inaD-RA | 2295 | CG3504-RA | 197..233 | 9..45 | 185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:27:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22857601..22858212 | 656..45 | 3030 | 99.7 | Minus |
| 2R | 25286936 | 2R | 22857081..22857394 | 1054..746 | 870 | 93.1 | Minus |
| 2R | 25286936 | 2R | 22857450..22857548 | 752..655 | 430 | 98 | Minus |
| 2R | 25286936 | 2R | 22858562..22858598 | 45..9 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:28:00 has no hits.
FMO11276.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:12:13 Download gff for
FMO11276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| inaD-RB | 189..1265 | 1..1076 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:22:47 Download gff for
FMO11276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| inaD-RB | 189..1265 | 1..1076 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:28 Download gff for
FMO11276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| inaD-RB | 189..1265 | 1..1076 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:28 Download gff for
FMO11276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22857456..22857546 | 657..746 | 98 | <- | Minus |
| 2R | 22857064..22857393 | 747..1076 | 92 | <- | Minus |
| 2R | 22857601..22858211 | 46..656 | 99 | <- | Minus |
| 2R | 22858562..22858606 | 1..45 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:22:47 Download gff for
FMO11276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18746085..18746129 | 1..45 | 93 | | Minus |
| arm_2R | 18744587..18744916 | 747..1076 | 92 | <- | Minus |
| arm_2R | 18744979..18745069 | 657..746 | 98 | <- | Minus |
| arm_2R | 18745124..18745734 | 46..656 | 99 | <- | Minus |
