FMO11277.5prime Sequence
1136 bp (1046 high quality bases) assembled on 2011-12-02
> FMO11277.5prime
CAGTCGACATGGGCGATCGTAGTTGGAACCTGCTGCAGTATGCCACCGAG
AAGGCGCCAATACCACTGGACGGCTACACCGCCGAGGAGGCGGCCGAGTT
CAAGGACAGCATCAGGCAGAAGATCGTAGACGATCTGAAGTCCATGACGG
GCGAGGAGCTGATAGAGCTGGTCAAGCAGAATGCTGCCAAGGTGGAGGAG
GAGAAGGTGGAGATTCCGCCCACGGAACCCCTATCCGGCACCGAGGAGGG
CAAGGAACGAGTGCAGGATGATGCGGATCTCATAGATGCCGGTATCATAG
CCGAAATGGTCGCTGGACTGTGCACCAAAAGCCAGAAGGAGACGTTCATC
AAGGTGATAACGAAGTATATCAGCAGTCAGAGACGCCACTATTCGATGCG
GCCCCATCGCGAGCAGGAGCAGCGAAATGCGGAGGATGTGCTATTCGACA
TGTTCGCCAGCGAGGAGACGGGCCTCATCTCGATGGGCAAGTTCCTGGCC
GGGCTAAAGACCACCGGAATTCGCCGGAACGATCCGCGAGTGCGAGAACT
GATGGACAACTTGAAGAAAGTGCACAAGCTAAATAACTACGAGACGGGTT
CTTCGGCGGAAACTCAGCATCTCAATCGAGAGACCTTCAAGGCTGTGGTT
GCCCCCAATATTGTGCTGATTGCCAAGGCCTTCCGGCAGCAGTTCGTTAT
TCCCGACTTTACGAGTTTCGTCAAGGACATCGAGGATATTTACAATCGCT
GCAAGACCAACACTTTGGGCAAGTTGGCCGACTACATTCCGCAGCTGGCT
CGCTATAATCCCGATTCCTGGGGCCTGAGCATCTGCACGATTGATGGCCA
GCGCTTCTCCATCGGCGATGTGGATGTGCCCTTCACACTCCAGAGTTGCA
GTAAGCCGCTGACCTACGCCATTGCCCTGGAGAAACTGGGTCCCAAGTCG
TGCACTCTTATGTGGGCCAGGAGCCGAGTGGCAGGAACTTCAACGAACTT
GTTCTTGGATCAGAACAAAAAGCACACATCCGATGATCCACGCCTGGTGC
CATTCTGACTGGCTCCCTGATTGAACGCCTTGTTCAAGCGGGACTGACTC
GCGTGAAATCTTCGAACTAACCCCATGCTGATCAAC
FMO11277.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:28:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42708-RB | 2970 | CG42708-RB | 64..1172 | 9..1115 | 5195 | 98.5 | Plus |
| CG42708-RC | 2741 | CG42708-RC | 200..943 | 374..1115 | 3370 | 97.7 | Plus |
| CG42708-RD | 2912 | CG42708-RD | 494..1237 | 374..1115 | 3370 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:28:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12674991..12675355 | 373..9 | 1825 | 100 | Minus |
| 2R | 25286936 | 2R | 12672664..12673037 | 1017..644 | 1775 | 99.5 | Minus |
| 2R | 25286936 | 2R | 12673100..12673339 | 643..404 | 1200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:28:08 has no hits.
FMO11277.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:12:14 Download gff for
FMO11277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RB | 64..1154 | 9..1098 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:22:52 Download gff for
FMO11277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RB | 64..1154 | 9..1098 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:30 Download gff for
FMO11277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RB | 64..1154 | 9..1098 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:30 Download gff for
FMO11277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12672664..12673037 | 644..1017 | 99 | <- | Minus |
| 2R | 12673100..12673339 | 404..643 | 100 | <- | Minus |
| 2R | 12673899..12673928 | 374..403 | 100 | <- | Minus |
| 2R | 12674991..12675355 | 9..373 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:22:52 Download gff for
FMO11277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8560169..8560542 | 644..1017 | 99 | <- | Minus |
| arm_2R | 8560605..8560844 | 404..643 | 100 | <- | Minus |
| arm_2R | 8561404..8561433 | 374..403 | 100 | <- | Minus |
| arm_2R | 8562496..8562860 | 9..373 | 100 | | Minus |
