FMO11279.5prime Sequence
1144 bp (1023 high quality bases) assembled on 2011-12-02
> FMO11279.5prime
CAGTCGACATGCCCTTTCGACGCAGCAGTCTGAATCATCGGCATCGCGAT
GGCCATGTTTTGGTATGGAATCAGAGGAATCTCCACGAATCTCTGGAGCA
ACAGCCGCAGAGATGCTTTGCCACCCGGTACTTTGTGACCTTTATGCTTT
TCCTGGGCATGGCCAATGCCTATGTGATGCGCACCAACATGTCGGTGGCC
ATTGTGGCCATGGTGAACCACACGGCCATCAAGTCTGGAGAGGCAGAGGA
GTACGATGATGAGTGCGGAGATCGGGATATTCCTATTGATGACTCTCAGG
ATGGCGAGTTCGCCTGGAGCTCAGCTCTGCAGGGCTACATCTTGTCGTCC
TTCTTCTATGGCTATGTCATCACCCAGATTCCCTTTGGCATATTGGCCAA
GAAGTACGGTTCCCTGCGCTTCCTCGGCTACGGCATGTTGATCAACTCCG
TGTTTGCCTTCCTGGTTCCGGTGGCTGCCCGCGGTGGAGGTGTTTGGGGT
CTGTGCGCCGTGCGTTTCATCCAAGGTCTAGGTGAGGGTCCCATCGTGCC
CTGCACCCACGCCATGTTGGCCAAATGGATTCCGCCCAACGAAAGGTCAC
GAATGGGTGCCGCCGTGTATGCGGGTGCACAGTTTGGAACCATCATCTCT
ATGCCACTTTCCGGCCTGCTGGCTGAATACGGATTCGATGGCGGCTGGCC
GTCGATCTTCTATGTGTTTGGAATTGTGGGTACCGTCTGGTCCATCGCCT
TCCTGATCTTCGTGCACGAGGATCCCTCTTCACATCCCACTATTGATGAG
CGCGAGAAGAAGTACATTAACGATTCCCTCTGGGGAACTGATGTTGTTAA
GAGCCCTCCCATCCCTTCAAGCTATCATCAAGTCGCTGCCCTTCTACGCC
ATTCTGTTCGCCCACATGGGTCACAACTACGGCTATGAGACTCTGATGAC
CGAGCTGCCCACCTAACATGAAGCAGGTGCCTCCGCTTCTTCCTGAAGTC
GACGGACTGCTCAGCTCCCTTGCCCTACTTGACAATGTGCTCTTCTCCAT
GTTCACTCTCGGGTGGTCGCCGAATTGAATGATTAGCTCGGAAAAATTTC
CGCAACGTCCACACAGAAGCTGTAATCAAGAATGCCGATATGAA
FMO11279.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:28:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Picot-RB | 2333 | CG8098-RB | 310..1422 | 9..1122 | 5095 | 97.8 | Plus |
| Picot-RD | 2870 | CG8098-RD | 950..1959 | 112..1122 | 4580 | 97.5 | Plus |
| Picot-RC | 2367 | CG8098-RC | 447..1456 | 112..1122 | 4580 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:28:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16656631..16657194 | 851..288 | 2805 | 99.8 | Minus |
| 2R | 25286936 | 2R | 16657263..16657439 | 288..112 | 885 | 100 | Minus |
| 2R | 25286936 | 2R | 16656330..16656568 | 1090..850 | 650 | 93.9 | Minus |
| 2R | 25286936 | 2R | 16658746..16658849 | 112..9 | 520 | 100 | Minus |
| X | 23542271 | X | 4784486..4784872 | 327..713 | 465 | 74.7 | Plus |
| X | 23542271 | X | 4784336..4784422 | 144..230 | 270 | 87.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:28:23 has no hits.
FMO11279.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:12:15 Download gff for
FMO11279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Picot-RB | 305..1398 | 9..1104 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:01 Download gff for
FMO11279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Picot-RB | 310..1403 | 9..1104 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:38 Download gff for
FMO11279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Picot-RB | 310..1403 | 9..1104 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:38 Download gff for
FMO11279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16657264..16657439 | 112..287 | 100 | <- | Minus |
| 2R | 16658747..16658849 | 9..111 | 100 | | Minus |
| 2R | 16656316..16656566 | 852..1104 | 92 | <- | Minus |
| 2R | 16656631..16657194 | 288..851 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:01 Download gff for
FMO11279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12544769..12544944 | 112..287 | 100 | <- | Minus |
| arm_2R | 12546252..12546354 | 9..111 | 100 | | Minus |
| arm_2R | 12543821..12544071 | 852..1104 | 92 | <- | Minus |
| arm_2R | 12544136..12544699 | 288..851 | 99 | <- | Minus |
