FMO11280.5prime Sequence
1131 bp (1033 high quality bases) assembled on 2011-12-02
> FMO11280.5prime
CAGTCGACATGGGCCTGCTGCTGCTTCTGGTGCTGATAGCGGGCATTGGC
TGCGCAACTGCAGCAGCCAACATTGACCTGGAGGCCAAGACGTTTGTGAA
TCAATCGAGCGATCGCTACTACAGGTTCTATAATGAGATTGCCGCCGAAA
CGTATTCGGCCAACAACGAAGAGGACTTCGATGCCCTTTTCTCCAAACTA
AACAATGTGAAGCGGATTGCCGAGGAGCTGGTGAGCATCTCCCGGCAGGC
TGCGACCTACGATCTGGACAGGATTCGCAGCCCGCAGACGAAGATGGCCC
TCCAGGAGCTGCGCACTGCGGGTGACTTGTTCGTCCTGGGCGACGACTAT
TTCTCCTCCGTACAGATGAACTTGGCTGCGCTGCAAACACTTTCCACGGA
CAAGGACATCGAGCCGTATCTTGGTGGGGCCAATATGCCCAACGAGGACG
ACAGTCCGCTGGCCTATTTCCCAGACATCCAGAAGATCGTGCAGAGCAGC
AAGGATGCCGACGAGCTGAAGTACTATTGGGAGGCCTGGCGGGATAAGAA
CCAGCTGTGGGCCTCCCTCAACTTCTACACCATAGTGCAGTCTTACCAGA
GGGCCGCCAAGATCCTGGAGGTGCCGGTGCACAAACTGTGGTACCGATAC
GACAGCCAAGAGATGCTGCAGCAGATGGAGCAGGCGATGACGGAGCTGCG
CCCCGCATACCAGCAGCTCCACGCCTTTGTCCGCCAGGAGCTGCATAAGA
AGTACGGCTCCGATGTGGTCAATCTCAATGGACCGATACCGGATCACCTG
TTCCAGCATGTTCTCGAACAGGCCTGGGCCAGTGGCAGCATCCTGGAGGA
TTACTACCCGCGTGCCCAGTTGCCGGAGTTCGATGAGTACGTTAGTCACT
TGACCGCCAAGACCATGGTGAACGAGTCCGAAAACTCTACACTTCGCTGG
GCTCGAGCTTCTGTCGCCGAGTCACAGAATCAGCTGAAGGAACCCAACCA
GGACGCCCAACGACGACTTGTCCGCCCCTCCATCTTTGACCCTCACGCCA
CACCGGTGTACCTTATGTACTGGCGATAAGTTCAGCTTCCTGAAGCTGAT
GCAGTAACACAGCAATGCCCAGGTTTATCTA
FMO11280.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:28:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ance-4-RA | 1948 | CG8196-RA | 56..1162 | 9..1113 | 5145 | 98.2 | Plus |
| Ance-4-RB | 2008 | CG8196-RB | 158..1222 | 51..1113 | 4935 | 98.1 | Plus |
| Ance-4-RB | 2008 | CG8196-RB | 56..97 | 9..50 | 210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:28:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9040747..9041811 | 1113..51 | 4665 | 97.7 | Minus |
| 2R | 25286936 | 2R | 9042046..9042087 | 50..9 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:28:31 has no hits.
FMO11280.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:12:16 Download gff for
FMO11280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ance-4-RA | 48..1181 | 1..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:07 Download gff for
FMO11280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ance-4-RA | 48..1181 | 1..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:43 Download gff for
FMO11280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ance-4-RA | 48..1181 | 1..1130 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:43 Download gff for
FMO11280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9040728..9041811 | 51..1130 | 97 | <- | Minus |
| 2R | 9042046..9042092 | 1..50 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:07 Download gff for
FMO11280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4928233..4929316 | 51..1130 | 97 | <- | Minus |
| arm_2R | 4929551..4929597 | 1..50 | 92 | | Minus |
