FMO11281.5prime Sequence
1139 bp (1031 high quality bases) assembled on 2011-12-02
> FMO11281.5prime
CAGTCGACATGAAATATATAAATTGCACTCAGCCCGCCATCGATGACTTC
CCCCGAGACCTATTCTCGGAGGCGCAAAGACAGTCTGGTGCTGTTGTACT
TCATGTTATAGCCAGTTTATATTTATTTGTAGCCTTAGCCGTAGTGTGTG
ATGAGTACTTTGTGCCAGCAGTTGAGAAAATATGTGCAGCACTCAACATG
TCCAATGATGTGGCGGGTGCCACTTTCATGGCCGCGGCCACCTCCGCCCC
AGAATTATTTGTCAACGTGATAGGAACCTTTATCACGGAGGGCGACATCG
GAGTGGGCACGATTGTCGGATCGGCGGTATTTAACATCCTGGCAGTGGCC
GCGTGCTGCGGAATCGGAGCTGGCATGACAATACCCTTGGACTGGTGGCC
ACTGACGCGGGACAGCATCGCATACGGAGTTACAGTGGCCATTCTCATTT
GTGTTATGCACGACGAGCGCGTCGAGTGGTATGAGGCCCTCATCCTGGTC
TCCCTGTATGCCGTCTATCTTGCGGTCATGTATTTCGACAAAACTTTCCA
AAAGTGCGCCAAAGGTGGCGTTAAGCAGGCTCGTTCTCGCAGCCGGTCCT
CCAACTGCAGCATACATACAAAGAACAGCAATGAGAAGGAACCAGAGCTT
GTGGAAAACCGCATTTGCCAGAACATGGCGAACATACAGCTAAACGGAGG
ACTTAACAAAGAGCAGGCCAAGGCCACAAGCACATCCGGAGCCGGTACCA
CCGCGATTTCGATAACCACCTCGACCATGACCACAACTTTGAGCACCACC
CATAGTGCCGGAGAGGAGGTGGAGCAGTTGGTCTTTGTTCGGGACCAGGG
GCCATTGTGCAGATGGCACCACTAGACGATGCCGAGGCAGAATCTCACGT
GGCCCGTAGCAGCCGCTGACGAGGGCCGTAAGGAGGAGGGAAACTCTCTG
CTCTCATACCGAAGGATAGAGCTGCCTTTGCCCAGTTTACCTGGCCTCAT
CATTGGCCGATCATCTGCTATTTCCGCATTGCAATCCTGACTGCAGAAGC
CAAAAACAAATTAGAATTCCCACTGAACTAATCCATGGTGCATAGATGGA
TCCGAATCGCTTCCATGAGTACGGGAAGATACGAAATCG
FMO11281.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:28:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zyd-RA | 2172 | CG2893-RA | 153..1260 | 8..1112 | 4985 | 97.6 | Plus |
| zyd-RF | 2094 | CG2893-RF | 82..1182 | 15..1112 | 4950 | 97.6 | Plus |
| zyd-RH | 2341 | CG2893-RH | 330..1429 | 16..1112 | 4945 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:28:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 23032743..23033126 | 643..1024 | 1520 | 97.7 | Plus |
| X | 23542271 | X | 23030420..23030613 | 188..381 | 955 | 99.5 | Plus |
| X | 23542271 | X | 23030666..23030856 | 377..567 | 955 | 100 | Plus |
| X | 23542271 | X | 23030190..23030363 | 16..189 | 870 | 100 | Plus |
| X | 23542271 | X | 23032518..23032600 | 563..645 | 415 | 100 | Plus |
| X | 23542271 | X | 23044008..23044153 | 197..342 | 190 | 75.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:28:40 has no hits.
FMO11281.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:12:16 Download gff for
FMO11281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2893-RA | 139..1219 | 1..1076 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:12 Download gff for
FMO11281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zyd-RA | 145..1225 | 1..1076 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:45 Download gff for
FMO11281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zyd-RA | 145..1225 | 1..1076 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:45 Download gff for
FMO11281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 23030190..23030363 | 16..189 | 100 | -> | Plus |
| X | 23030422..23030609 | 190..377 | 100 | -> | Plus |
| X | 23030667..23030853 | 378..564 | 100 | -> | Plus |
| X | 23032520..23032600 | 565..645 | 100 | -> | Plus |
| X | 23032746..23033180 | 646..1076 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:12 Download gff for
FMO11281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| XHet | 9008..9181 | 16..189 | 100 | -> | Plus |
| XHet | 9240..9427 | 190..377 | 100 | -> | Plus |
| XHet | 9485..9671 | 378..564 | 100 | -> | Plus |
| XHet | 11338..11418 | 565..645 | 100 | -> | Plus |
| XHet | 11564..11998 | 646..1076 | 95 | | Plus |
