FMO11283.5prime Sequence
1108 bp (1004 high quality bases) assembled on 2011-12-02
> FMO11283.5prime
CAGTCGACATGGCGCGGTTTAGTGGAGTTGTACTGCTCCTGGCAATCGTC
CTTCTTGCCGTTTTTGTGGCACAAGGCCTGGCAGAGAAGAACGCCAATAG
GCAGAAGCAGCAGAAGCCCAGACCGGGAAATCAAAACTTTGGTATCCAGA
AAAATAAGCGTCCAAAGCCCCAAAAAGTGCAGAAACAGAAGCCCAACAAG
CAACAGGGTCAGAATGGTCAAGAGCCAAAGGTATTTACCACAACGGTTCC
TGATTTGGGCAGGCTCCGTGGACGAACTCTCACCACCGATTGGACAGGGC
AGAAGATAATGCAGTTCTTGGACATTCCCTATGGCAAAGCAGAGCGATTC
AGGCCAGCTGAGCCCGCACCTTCCTGGAAGGGCGTCCTTCCCGCCCATCG
ACCACACGCCGGCTGTCCATCCATTCAGGATCTGATTGTGTTCGCCAAGC
TGGAGGAAGATGGCTTCGATGTGGAAGACTGCCTGCGTCTGTCAGTGAAC
ACCAAGGCGATGGAGGGCAAGTCCCTGCCGGTGATGGTGTACATCCATGG
CGATTTCTTCTACGACGGTGACTCTGTGGAGGCAGCTCCCGGGTATTTGT
TGGAGCACGATGTGGTCCTGGTGTCCGTGCGTTATCGTCTGGGACCCTTC
GGCTTTCTGTCCACGCTGACGGACGAGATGCCTGGCAATGCAGCGGTCAC
GGACATCATCCTGGCCCTCAAGTGGGTGCAGCAGCACATCGCATCCTTCG
GCGGCGATCCACAGCGGGTGACGCTCTTCGGCCCAGTGGGCGGAGCAGCA
TTGGTCAACGTGCTCACCCTGAGTCCTGCGGTTCCGGCCGGCCTCTTCCA
TCGCGTGATCTATCAGTCTGGGACGGCACTGTCGCCCGCCTTCATCACGG
ATGCTCCACTGGGCGCCACCAAGGCCATGGCCGGATCGCGGGATGCAAAC
AGTCCACTAGGTGGATCAGCTGACAAGTGTCTTAACCGTCTAAACGCACT
ATGCTCTGGGCGCCTTCACGTCCACGCGAAATCACCATCCCTGTCCGCGG
AGCTACGGTGGTGTACGCTGTGATCCGGCGGACATCTGCATCGTCGGGAC
ATCAGGTG
FMO11283.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:16:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9289-RA | 2129 | CG9289-RA | 27..1119 | 9..1088 | 5020 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:16:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8682569..8683061 | 998..509 | 2285 | 99 | Minus |
| 2L | 23513712 | 2L | 8684006..8684350 | 353..9 | 1710 | 99.7 | Minus |
| 2L | 23513712 | 2L | 8683150..8683306 | 509..353 | 785 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:16:19 has no hits.
FMO11283.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:23 Download gff for
FMO11283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9289-RA | 1..1097 | 9..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:16:32 Download gff for
FMO11283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9289-RA | 27..1123 | 9..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:55 Download gff for
FMO11283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9289-RA | 27..1123 | 9..1091 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:55 Download gff for
FMO11283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8684006..8684350 | 9..353 | 99 | | Minus |
| 2L | 8682465..8683060 | 510..1091 | 96 | <- | Minus |
| 2L | 8683150..8683305 | 354..509 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:16:32 Download gff for
FMO11283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8682465..8683060 | 510..1091 | 96 | <- | Minus |
| arm_2L | 8683150..8683305 | 354..509 | 100 | <- | Minus |
| arm_2L | 8684006..8684350 | 9..353 | 99 | | Minus |
