FMO11284.5prime Sequence
1135 bp (1024 high quality bases) assembled on 2011-12-02
> FMO11284.5prime
CAGTCGACATGCTAGCCGAAGCATTGGGCTATGGCTACCTGCTGGCCTAC
GTGATCTGCCTGCTCTGCTGGCCAGGAGAGGCGTATCCCGCCAGCAGTAG
CTACCGGGATCTGGATATATGCAATCATTGGGACGGAAGACGTCACTTCC
TGGAACTGGGAAGTCCAGCTGGAGAGGTGCACGCCAGGAATGTGACTACT
ACTGCCTATAGAAGCTCGCCGCTGGTTTTTAAGAACGATGCAGTGGCCGG
GGATGTGTGGTACCAGTGCAGCCTGGAGCTGGTCACCTGTGCCGAGTGCG
TCATCCGAGTGGCCTTCACCTATGCCAACTTCTCCAAAAGTTGCGGCAAT
ACGGGTGGCAAGTCCAGCATGTGTCCCTGCGAGCATATCCAGTTCTCGGA
GCCGCCCTATGATTCCACCATTTCCGGCCAAGAGTTCTGTGGAGATGGCA
AGGTGTTTCGGAGCAAAACCAGGACACTGCAGTTGAAATTCTTCTACAGA
GCCAGCAATGCGCACGTGTTCTCCCTTCAATACTTCTCGGAACGCAACGT
GCGGATAGTCAGTGGCTCCCCCAAGCAGTCTATTGTGGGCAATGGGAGTA
CAAAGTCCCAGCCACAAGTGATCTCCACGCCGTATTTCCCGATGGCATAT
CCACGCGACTATGGTATCGAACACATCCTCACCTGCGAGGCGGACAACTG
CCAGGTGCGTTTGGATTTTACCGACTTCCAGCTGGGCCTCACCTCCACCC
TAGAGATCTTCGACTCCAATGGCCAGATGCTGGACTCCTATACGGGTGAG
CACTTCCGTCCGCCGATCACGGTGAGCAGCGGCAAGTCTCTGCTCCTGCA
GTTTCGAGGAAATTCCGCCACCGGAGTGGGTTTTCGCGCGGAGGTTAGCT
TCGTATCCTCCAAGCAGCTCAAGGACGAGCGACTGGTGCCCTACACAGAT
TGGCGGGGGATGGTTACCGGACTTGGTGGCCGCCATCACCATGATGACAT
GATCGAAAATGCACGGACGTGCCGGCTTTTTGACTGCATCTGGATTATAA
GCCCGGCACCACTACATGATGATGAAACCCCACATCCTCGGTTGGAAGTG
GATGAACTCTACGCATTGCCGTCAAGACTGAACTT
FMO11284.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:16:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17352-RA | 3160 | CG17352-RA | 89..1202 | 9..1121 | 5185 | 98.2 | Plus |
| CG17352-RB | 3174 | CG17352-RB | 89..1202 | 9..1121 | 5185 | 98.2 | Plus |
| CG17352-RC | 3206 | CG17352-RC | 89..1202 | 9..1121 | 5185 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:16:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8355144..8355548 | 948..544 | 2025 | 100 | Minus |
| 3L | 28110227 | 3L | 8355611..8355942 | 544..213 | 1660 | 100 | Minus |
| 3L | 28110227 | 3L | 8356005..8356208 | 212..9 | 1020 | 100 | Minus |
| 3L | 28110227 | 3L | 8354471..8354612 | 1086..947 | 315 | 91 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:16:29 has no hits.
FMO11284.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:24 Download gff for
FMO11284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17352-RB | 83..1187 | 1..1108 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:16:37 Download gff for
FMO11284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17352-RC | 83..1187 | 1..1108 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:57 Download gff for
FMO11284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17352-RC | 83..1187 | 1..1108 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:57 Download gff for
FMO11284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8356005..8356212 | 1..212 | 98 | | Minus |
| 3L | 8355144..8355548 | 544..948 | 100 | <- | Minus |
| 3L | 8355612..8355942 | 213..543 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:16:37 Download gff for
FMO11284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8348244..8348648 | 544..948 | 100 | <- | Minus |
| arm_3L | 8348712..8349042 | 213..543 | 100 | <- | Minus |
| arm_3L | 8349105..8349312 | 1..212 | 98 | | Minus |
