FMO11285.5prime Sequence
1122 bp (1007 high quality bases) assembled on 2011-12-02
> FMO11285.5prime
CAGTCGACATGCTGAACTCGAATGCCACCGGCGGCAACAATCATGGGGGC
AGCAGCCGTCGGCCCTTTACCCGCAATTCTTCATCGGTCCGCTCGCAACG
CGGCGGTGGTGGCGGGCTGGGCGGTCGCATGGTATACTCGCCACACACAC
ATCCGCACGTCCAGCAGCAGCAACAACAACAACAGCAGCAACAGCAACAG
GGGCAGCAGCGGTCCAGCAATAACGGCAACAACAACCTGTGGCTGGGCAA
CAGTCCGTGGTGCAACGTCAATTTAAACGGTGGCAACAGCGGCAACAACA
ATAACAACGGTGGCAACAACAACAATAACAACGGTGGCAACATCAGCAGC
AACAACAACAGCAACAATGTCAATAACAAAGATGCAAACCCAAATTGCGA
TGTACAAACAAGTAATTCTAGCGGAACTTGTATTTATAACAATAGCAAAG
CGCATCATCATCACAACAACAGCAACAACAATGGTCACACTCAGAGCCAC
ATTCACACTAATCATTCCCTCCACCAAGGTCACCATCACCCCCACCACAC
CCAAATGCACACACCCCACTACCCGCATTCGAGTTCACCACAGCAGTCAA
ACAGTTACCGCCAATACCCACCGCATTCCTACTCCCCCAACTCCCCACAC
AGCAACGGCCATACAAACAGCAATGCTAGCAATAATCCCATTAGTCAGCG
TAGTAATCCCCAAGCCCACCCCAACCAGAACCAAAATTCCAATTTTTACG
AGATGTGTACGGGGAAGTGGGGGATCCCACACCTATGGATCCATGTCCGT
TTCCCTGGTGAGACTGAATCCTGCCCGTTTGTGCCTAACGCTTGGCCCTG
TCACGCCGCCCGCCCAGCGAGTAGTATCCTTTGGCCACAGATCCCATTCC
CATTCCAATTCCAGTTCCAACACCAGTTCTAGTGATCAGAATCAGCATAC
CGCCGCCACGTAGTCAAACCAGCACCCCAAATTCCACATCATAGTCAGTA
CCAGTACCATACCAGTACCAATACCGATACCAAGTTCCATTCCGCCACAA
CAGTACCATCCAATTGCCATAGCCCACACAGCAACCGACTATCGCCAATT
CCCATTCGGCTTAACCGGACGA
FMO11285.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:16:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mura-RC | 4671 | CG9381-RC | 207..1294 | 8..1099 | 5105 | 98.4 | Plus |
| mura-RB | 3807 | CG9381-RB | 258..648 | 8..398 | 1955 | 100 | Plus |
| mura-RA | 6303 | CG9381-RA | 225..615 | 8..398 | 1955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:16:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9542261..9542925 | 1062..397 | 2925 | 98.2 | Minus |
| 3R | 32079331 | 3R | 9546798..9547187 | 397..8 | 1950 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:16:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2700 | 312..714 | 217 | 55 | Plus |
FMO11285.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:25 Download gff for
FMO11285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mura-RC | 201..1304 | 1..1111 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:16:52 Download gff for
FMO11285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mura-RC | 201..1304 | 1..1111 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:01 Download gff for
FMO11285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mura-RC | 201..1304 | 1..1111 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:01 Download gff for
FMO11285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9542225..9542924 | 398..1102 | 97 | <- | Minus |
| 3R | 9546798..9547193 | 1..397 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:16:52 Download gff for
FMO11285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5367947..5368646 | 398..1102 | 97 | <- | Minus |
| arm_3R | 5372520..5372915 | 1..397 | 99 | | Minus |
