FMO11286.5prime Sequence
1095 bp (1003 high quality bases) assembled on 2011-12-02
> FMO11286.5prime
CAGTCGACATGAATTACTACGTCTGTCTGCACCAGGAGGGTGTTAATAGC
ATACCCAAGTTAATCGAGAAGGCCTTCGCGAACAACTATAATGTGGTTTC
CACCTCTATCAACGCCAATATGTTGCCCTTCGAACCACACGAATCGGATC
CCACATATCCGGCCACAATTTTGAGCGGCAGCGACTGGAATTCCAAGGTG
ATATTTACCATGTCCGACGTGAATGTGGACTCGCCGAATGACAAGCTGCG
CGAACACGCAAAGGAGGTATTCATGAGGGACGTGGCCTGGGCGGAGCACC
TGCAAAATGTGGGCAACCTGATGGTACGGCTGCGCGGTCCGGAAAACGAG
AATCTGGCCTCCATTGTGCTGGCCAAAACAAAGGGGAACTGGTTCATCCA
AGTGCCCATCACCAATCCAGAACTGGCCACATTCGAGCACCGAAAGGATG
CCACCGCCGAGGAGGTGGCTGAAGCGGAATCGAATGACCCGTGGAACTGG
TGGAATAACCTGCGCATGGTCACCAAACACAGCACCAAAGTGAAGGTTGT
GATAGAGCTAAACGATGCTGATCGACCCAGCAAGGAAACAGTGCGTCGCT
GGTTGGGCGAACCAATCGAGGCAATCATCATTCCGTCTTCCCTGTTCGTC
AGAAACCGCTCCAACTACTGTGTGCTGAAGAAGGAGTGGCAGCTCATCGT
CGGGCACTTCATCTCGGTACGGGCCAACATCATCATCTCCACAAATCCCA
ACGATAAAGCTTTGTGCCAGTACGCGGATTACGTAAATAAGCTAATTAAT
GATAACTGCGATAAGCACATGCTAAACAGCTATGAAAACATGCTGGAAAT
TCCACTGCAGCCTCTTTGCGATAATCTGGACACCTATACCTATGAGTATT
CGAAACTGATCCTGTCAAATACAAACTCTATCAGATGCCGTACAGCGCCC
TGTGGATCGAGTAGCGCTGCGAGCTAAACGAAACTGACAGTGTATGCTAC
TGGGGTGGGAGGACGAGGTTCATTAGCGAGAGCTGTTTTCAATGCTGGCG
GAGTACCGAAGCGCAAGGTCGGCCTCTCACTTCTAGAAACGATTC
FMO11286.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:16:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| csul-RB | 1998 | CG3730-RB | 96..1173 | 9..1077 | 4910 | 97.9 | Plus |
| csul-RA | 2013 | CG3730-RA | 96..1188 | 9..1077 | 4750 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:16:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16265181..16265626 | 384..829 | 2215 | 99.8 | Plus |
| 2R | 25286936 | 2R | 16264747..16265123 | 9..385 | 1885 | 100 | Plus |
| 2R | 25286936 | 2R | 16265686..16265804 | 828..944 | 495 | 98.3 | Plus |
| 2R | 25286936 | 2R | 16265935..16266004 | 1008..1077 | 200 | 85.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:16:51 has no hits.
FMO11286.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:25 Download gff for
FMO11286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csul-RB | 73..1142 | 9..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:16:57 Download gff for
FMO11286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csul-RB | 96..1165 | 9..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:04 Download gff for
FMO11286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csul-RB | 96..1165 | 9..1069 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:04 Download gff for
FMO11286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16265688..16265853 | 830..986 | 94 | -> | Plus |
| 2R | 16264747..16265122 | 9..384 | 100 | -> | Plus |
| 2R | 16265182..16265626 | 385..829 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:16:57 Download gff for
FMO11286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12153193..12153358 | 830..986 | 94 | -> | Plus |
| arm_2R | 12152252..12152627 | 9..384 | 100 | -> | Plus |
| arm_2R | 12152687..12153131 | 385..829 | 99 | -> | Plus |
