FMO11287.5prime Sequence
1092 bp (1013 high quality bases) assembled on 2011-12-02
> FMO11287.5prime
CAGTCGACATGGATCGCAAGGCTGAGCTGGAACGCAAGAAGGCCAAGTTG
GCCGCCCTGCGCGAGGAGAAGGATCGCCGGCGTCGCGAGAAGGAGATCAA
GGACATGGAGGAGGCGGCCGGTCGCATTGGCGGCGGAGCAGGCATCGACA
AGGATCAGCGCAAGGATCTCGACGAAATGCTGTCATCGCTGGGCGTGGCC
CCCGTCTCCGAGGTCCTTTCCTCACTCTCCTCCGTCAACTCGATGACTTC
GGACAACTCGAACACACAGACCCCCGACGCCAGCCTCCAAGCCACTGTCA
ATGGCCAGAGCGGCGGAAAGAAACAGCCCCTCAACCTAAGCGTCTACAAT
GTGCAGGCTACGAACATTCCACCAAAAGAGACACTGGTCTACACAAAGCA
GACCCAGACGACCAGTACCGGAGGCGGAAACGGCGATGCTCATGCTACGG
ATTATTATGATGAATACAATCTTAATCCGGGTTTAGAGTGGGAGGATGAA
TTCACAGACGACGAAGAGAGCTCACTGCAGAACCTGGGCAACGGATTCAC
CTCCAAGCTGCCACCGGGCTATCTCACCCACGGCCTGCCCACCGTTAAGG
ACGTCGCCCCGGCCATCACACCACTCGAGATCAAGAAGGAGACTGAAGTG
AAGAAGGAGGTCAACGAGCTGTCCGAGGAGCAGAAGCAGATGATCATACT
GTCGGAGAACTTCCAGCGGTTCGTGGTGCGTGCCGGCCGCGTCATCGAAC
GGGCCCTCTCGGAGAATGTGGACATATACACGGACTACATCGGCGGCGGC
GACAGCGAGGAGGCGAACGACGAGCGATCGCATGCGCGGCTCTCGCTGAA
CCGCGTCTTCTACGACGAGCGCTGGTCGAAGACCGCTGCATCACCAGCAT
GGACTGGTCCACCCACTTCCCCGAGCTGGTGGTGGGGCCTCGTACCACAA
CAACGAGGAGAGTCCGAACGAGCCGGACGCCGTTGTGATGGTGTGACCAC
CAAGTTCAAGAAGAGCACGCCCCGAAGACGTCTTCCACTGCCAGAGCGCG
GTTGATGTCACACTGCTTGCCAAGGTCCATCCCACCTTGAAT
FMO11287.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:17:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sw-RE | 3070 | CG18000-RE | 384..1458 | 9..1084 | 5095 | 98.6 | Plus |
| sw-RD | 2889 | CG18000-RD | 200..1277 | 9..1084 | 5055 | 98.3 | Plus |
| sw-RL | 3032 | CG18000-RL | 343..1420 | 9..1084 | 5055 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:16:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20183291..20183682 | 1052..660 | 1700 | 97.7 | Minus |
| X | 23542271 | X | 20221798..20222189 | 1052..660 | 1700 | 97.7 | Minus |
| X | 23542271 | X | 20229672..20230063 | 1052..660 | 1700 | 97.7 | Minus |
| X | 23542271 | X | 20175464..20175855 | 1052..660 | 1685 | 97.5 | Minus |
| X | 23542271 | X | 20191015..20191406 | 1052..660 | 1685 | 97.5 | Minus |
| X | 23542271 | X | 20198731..20199122 | 1052..660 | 1685 | 97.5 | Minus |
| X | 23542271 | X | 20206455..20206846 | 1052..660 | 1685 | 97.5 | Minus |
| X | 23542271 | X | 20214116..20214507 | 1052..660 | 1685 | 97.5 | Minus |
| X | 23542271 | X | 20235508..20235663 | 164..9 | 780 | 100 | Minus |
| X | 23542271 | X | 20176238..20176392 | 660..506 | 775 | 100 | Minus |
| X | 23542271 | X | 20184060..20184214 | 660..506 | 775 | 100 | Minus |
| X | 23542271 | X | 20191789..20191943 | 660..506 | 775 | 100 | Minus |
| X | 23542271 | X | 20199505..20199659 | 660..506 | 775 | 100 | Minus |
| X | 23542271 | X | 20207229..20207383 | 660..506 | 775 | 100 | Minus |
| X | 23542271 | X | 20214885..20215039 | 660..506 | 775 | 100 | Minus |
| X | 23542271 | X | 20222567..20222721 | 660..506 | 775 | 100 | Minus |
| X | 23542271 | X | 20230441..20230595 | 660..506 | 775 | 100 | Minus |
| X | 23542271 | X | 20235288..20235434 | 310..164 | 735 | 100 | Minus |
| X | 23542271 | X | 20234775..20234904 | 438..309 | 650 | 100 | Minus |
| X | 23542271 | X | 20186145..20186274 | 438..309 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20193875..20194004 | 438..309 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20201591..20201720 | 438..309 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20209261..20209390 | 438..309 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20216917..20217046 | 438..309 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20224652..20224781 | 438..309 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20178270..20178399 | 438..309 | 635 | 99.2 | Minus |
| X | 23542271 | X | 20232117..20232165 | 507..459 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:17:00 has no hits.
FMO11287.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:26 Download gff for
FMO11287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sw-RJ | 377..812 | 1..438 | 98 | -> | Plus |
| sw-RJ | 877..1514 | 439..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:17:04 Download gff for
FMO11287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sw-RE | 377..1451 | 1..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:08 Download gff for
FMO11287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sw-RE | 377..1451 | 1..1077 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:08 Download gff for
FMO11287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20229647..20230062 | 661..1077 | 96 | <- | Minus |
| X | 20230441..20230593 | 508..660 | 100 | <- | Minus |
| X | 20232117..20232164 | 460..507 | 100 | <- | Minus |
| X | 20233423..20233443 | 439..459 | 100 | <- | Minus |
| X | 20234775..20234902 | 311..438 | 100 | <- | Minus |
| X | 20235288..20235434 | 164..310 | 100 | <- | Minus |
| X | 20235509..20235669 | 1..163 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:17:04 Download gff for
FMO11287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20105849..20105976 | 311..438 | 100 | <- | Minus |
| arm_X | 20106362..20106508 | 164..310 | 100 | <- | Minus |
| arm_X | 20106583..20106743 | 1..163 | 97 | | Minus |
| arm_X | 20100721..20101136 | 661..1077 | 96 | <- | Minus |
| arm_X | 20101515..20101667 | 508..660 | 100 | <- | Minus |
| arm_X | 20103191..20103238 | 460..507 | 100 | <- | Minus |
| arm_X | 20104497..20104517 | 439..459 | 100 | <- | Minus |
