Clone FMO11288 Report

Search the DGRC for FMO11288

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:112
Well:88
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG7705-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11288.5prime Sequence

1111 bp (1012 high quality bases) assembled on 2011-12-02

> FMO11288.5prime
CAGTCGACATGCAGGAGCTCAAGCAACGTTTTGAGCGACGCCAGTTGGCG
GATGACCTGAAACAAAAACAGGTAATCCAGGATCATCTGCTGCAGAAAAT
CCTGTACTCAAAGCGCCTGCTGGTGGACCATGTGGAGGCACTGGAGCACT
GCATGCAGGAGCTGCAGACAGCCTCCAGTGCGAGTTCCGGCCGGCAATTG
CTGACGACGAGGAACGCCTGCCTGATATTGGGTGGCACTCTGTTGGAGCA
CCTGATAACCCCACGGGGCATCCGGTACACCATGGTTCCATCCATCCTCA
TTTCGGGTACCTTTGCTGCACTGTTCGCTGTGAAGAGCGTCTTCGTTTGC
CGCAACAAAATCGTGGAACGGAAGTTGGAGCAACTGGTCAAGACCATCGA
TGAGTTCGGCAACTGCATCCGTCGAAATATGACGTACTTTCAGGAGATCA
TCATCATGAAACAGGCCGAGCTCATAGAATCCCGTCAAATTGAGCGCGCT
TGGGATTGCATAACGGCCGCCAAGGAGGTTACCGAAATCCTGTACGATGC
CACCCGAAAACTGGAGACGGACTATCCCCTGCCGACAAAGTACAGCGCCT
ACTATGCGCCCATGGAAGAACTGCGGGAGTGCGAGTACTTCAAGAACAAT
GTCACGGACTACAGTCCCAAGCACATAAAAGACTTTCACAACATCTTCGC
CTATGTGCAGTCACAATACCTGCTCCGGCTGGCACTCACCATCACAACTC
GTCCCTCGATCTCTCAGCTGAGCGAGGATCTGGTGAAAATCGACAGCCTG
GTGAGGCAGTTGGTACAAGAGGAGGAGCAGCACTTCAGTAATCTAGCATT
AGCCCTGCAGAACAGAAGCAATGGAACTGGCTGAGCTGAATGCGACTAGA
GCAGAGCAACAGCAGAGTGACCAATTGCTGTGCTGCAGCACTCCTCGCTA
AAACTAAGCGCCTGCATGGTGCCGTGGTCCGCAGAATGTCAAGCTCTGAC
GTGACTCTCAAAACTCACTGTTCACAGAGCGCAAAAGACACTTCCAGGGC
TGGTGGCCTTGTGCCATATTTGCATGCATCGAAAATGCCTGCGTTCTGGA
TGATTTCCACG

FMO11288.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7705-RA 2328 CG7705-RA 45..1142 7..1090 4940 97.7 Plus
CG7705-RB 2780 CG7705-RB 45..516 7..478 2360 100 Plus
CG7705-RB 2780 CG7705-RB 1171..1594 681..1090 1570 94.1 Plus
CG7705-RB 2780 CG7705-RB 575..777 479..681 1015 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:17:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18676890..18677303 478..65 2055 99.8 Minus
3R 32079331 3R 18675904..18676235 1008..681 1385 97.3 Minus
3R 32079331 3R 18676629..18676831 681..479 1015 100 Minus
3R 32079331 3R 18677363..18677414 73..22 260 100 Minus
Blast to na_te.dros performed 2014-11-27 00:17:10
Subject Length Description Subject Range Query Range Score Percent Strand
Fw2 3961 Fw2 FW2 3961bp 1430..1494 116..182 114 65.7 Plus

FMO11288.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:26 Download gff for FMO11288.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7705-RA 62..1082 7..1021 99 == Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:17:09 Download gff for FMO11288.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7705-RA 62..1082 7..1021 99 == Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:12 Download gff for FMO11288.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7705-RA 45..1065 7..1021 99 == Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:12 Download gff for FMO11288.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18675889..18676235 681..1021 97 <- Minus
3R 18676630..18676831 479..680 100 <- Minus
3R 18676890..18677296 72..478 100 <- Minus
3R 18677365..18677412 24..71 100 <- Minus
3R 18677479..18677495 7..23 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:17:09 Download gff for FMO11288.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14501611..14501957 681..1021 97 <- Minus
arm_3R 14502352..14502553 479..680 100 <- Minus
arm_3R 14502612..14503018 72..478 100 <- Minus
arm_3R 14503087..14503134 24..71 100 <- Minus
arm_3R 14503201..14503217 7..23 100   Minus