FMO11288.5prime Sequence
1111 bp (1012 high quality bases) assembled on 2011-12-02
> FMO11288.5prime
CAGTCGACATGCAGGAGCTCAAGCAACGTTTTGAGCGACGCCAGTTGGCG
GATGACCTGAAACAAAAACAGGTAATCCAGGATCATCTGCTGCAGAAAAT
CCTGTACTCAAAGCGCCTGCTGGTGGACCATGTGGAGGCACTGGAGCACT
GCATGCAGGAGCTGCAGACAGCCTCCAGTGCGAGTTCCGGCCGGCAATTG
CTGACGACGAGGAACGCCTGCCTGATATTGGGTGGCACTCTGTTGGAGCA
CCTGATAACCCCACGGGGCATCCGGTACACCATGGTTCCATCCATCCTCA
TTTCGGGTACCTTTGCTGCACTGTTCGCTGTGAAGAGCGTCTTCGTTTGC
CGCAACAAAATCGTGGAACGGAAGTTGGAGCAACTGGTCAAGACCATCGA
TGAGTTCGGCAACTGCATCCGTCGAAATATGACGTACTTTCAGGAGATCA
TCATCATGAAACAGGCCGAGCTCATAGAATCCCGTCAAATTGAGCGCGCT
TGGGATTGCATAACGGCCGCCAAGGAGGTTACCGAAATCCTGTACGATGC
CACCCGAAAACTGGAGACGGACTATCCCCTGCCGACAAAGTACAGCGCCT
ACTATGCGCCCATGGAAGAACTGCGGGAGTGCGAGTACTTCAAGAACAAT
GTCACGGACTACAGTCCCAAGCACATAAAAGACTTTCACAACATCTTCGC
CTATGTGCAGTCACAATACCTGCTCCGGCTGGCACTCACCATCACAACTC
GTCCCTCGATCTCTCAGCTGAGCGAGGATCTGGTGAAAATCGACAGCCTG
GTGAGGCAGTTGGTACAAGAGGAGGAGCAGCACTTCAGTAATCTAGCATT
AGCCCTGCAGAACAGAAGCAATGGAACTGGCTGAGCTGAATGCGACTAGA
GCAGAGCAACAGCAGAGTGACCAATTGCTGTGCTGCAGCACTCCTCGCTA
AAACTAAGCGCCTGCATGGTGCCGTGGTCCGCAGAATGTCAAGCTCTGAC
GTGACTCTCAAAACTCACTGTTCACAGAGCGCAAAAGACACTTCCAGGGC
TGGTGGCCTTGTGCCATATTTGCATGCATCGAAAATGCCTGCGTTCTGGA
TGATTTCCACG
FMO11288.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:17:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7705-RA | 2328 | CG7705-RA | 45..1142 | 7..1090 | 4940 | 97.7 | Plus |
CG7705-RB | 2780 | CG7705-RB | 45..516 | 7..478 | 2360 | 100 | Plus |
CG7705-RB | 2780 | CG7705-RB | 1171..1594 | 681..1090 | 1570 | 94.1 | Plus |
CG7705-RB | 2780 | CG7705-RB | 575..777 | 479..681 | 1015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:17:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18676890..18677303 | 478..65 | 2055 | 99.8 | Minus |
3R | 32079331 | 3R | 18675904..18676235 | 1008..681 | 1385 | 97.3 | Minus |
3R | 32079331 | 3R | 18676629..18676831 | 681..479 | 1015 | 100 | Minus |
3R | 32079331 | 3R | 18677363..18677414 | 73..22 | 260 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:17:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fw2 | 3961 | Fw2 FW2 3961bp | 1430..1494 | 116..182 | 114 | 65.7 | Plus |
FMO11288.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:11:26 Download gff for
FMO11288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7705-RA | 62..1082 | 7..1021 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:17:09 Download gff for
FMO11288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7705-RA | 62..1082 | 7..1021 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:12 Download gff for
FMO11288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7705-RA | 45..1065 | 7..1021 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:12 Download gff for
FMO11288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18675889..18676235 | 681..1021 | 97 | <- | Minus |
3R | 18676630..18676831 | 479..680 | 100 | <- | Minus |
3R | 18676890..18677296 | 72..478 | 100 | <- | Minus |
3R | 18677365..18677412 | 24..71 | 100 | <- | Minus |
3R | 18677479..18677495 | 7..23 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:17:09 Download gff for
FMO11288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14501611..14501957 | 681..1021 | 97 | <- | Minus |
arm_3R | 14502352..14502553 | 479..680 | 100 | <- | Minus |
arm_3R | 14502612..14503018 | 72..478 | 100 | <- | Minus |
arm_3R | 14503087..14503134 | 24..71 | 100 | <- | Minus |
arm_3R | 14503201..14503217 | 7..23 | 100 | | Minus |