FMO11293.5prime Sequence
1083 bp (979 high quality bases) assembled on 2011-12-02
> FMO11293.5prime
CAGTCGACATGGGGGAAAGTCAGCTGCTGCTGTTGCTGCGGCTCCTGCTG
CTTCCTACAGTCCTCATTTCCTGGATGCACTGTGCCGGGGCCTCCACGGC
GGACATCTACAAGGGCGCTCGCCTGGGCCACCGTATCGTTCAGACGCGCT
ATGGCCGACTTCATGGACTCATCCTGCCCCTGGATAGCTTTCGCTTCCTG
CGATCCGTAGAGGTCTTCCTGGGTGTGCCATATGCAACGCCTCCCACCAA
ACAAAATCGGTTTAGTCCCACGAGAGCTCCAGCGCCTTGGGACGGCATCC
GGATATCGGATAAATACAGTCCCGTGTGTCCGCAGCGTTTGCCCAATATC
CAAAATGAGACGGCGGCGCTGGAGAAGATGCCCAAGGGTCGCCTGGAGTA
CTTAAAGAGATTGCTGCCATTTCTTGAAAACCAGTCCGAGGACTGCCTGT
ACCTAAATGTGTTCTCGCCGGTCAATGCCGGGGCCAATGAGAAGAAGTTG
CCGGTGATTGTGTTCATACACGGCGAGTCCTTCGAGTGGAGCAGCGGAAA
TCCTTACGACGGCAGTGTCCTGGCGAGCTACGGGGAAGTTGTGGTGGTAA
CACTCAACTACCGACTCGGAATATTAGGTTTCCTCAACGCCAATCCCAAT
CCACATGCCCATGCCAGAGTGGCCAACTACGGGCTGATGGACCAGATGGC
TGCCCTGCATTGGATTCAGCAGAATATCCAAAAGTTTGGCGGAGATCCCA
ATTCGGTGACGTTGGCGGGTCATGGAACGGGTGCAGCCTGTATTAATTAC
CTAATGACCTCGCCTACATGGTCCGTGGTCTCTTCCACCGGGCTATTCTC
ATGTCCGGATCAGCGTACTCATCGTGGGCTTTGGTCGAGGATCCAGTACT
ATTTGCCATCAAGCTGGCCAAGAGTTAACTGCACCATTCCCGAATGATAT
CAATCGCCACACGAGCAGAATTGTCGATTGTTCTGAGGGATGTTCCCTGA
GACTTTTACCTAACCGACATTTCAGGCTCAATTTTCTCCAATCTTTCGGC
TTCGGTTGAATGCGTTGTCTACGACCGGCATTC
FMO11293.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:29:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nlg4-RE | 6243 | CG34139-RE | 863..1947 | 9..1083 | 4930 | 97.7 | Plus |
| Nlg4-RD | 5452 | CG34139-RD | 863..1947 | 9..1083 | 4930 | 97.7 | Plus |
| Nlg4-RC | 5468 | CG34139-RC | 882..1966 | 9..1083 | 4930 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:29:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20212732..20213104 | 626..997 | 1550 | 97.9 | Plus |
| 3R | 32079331 | 3R | 20211255..20211507 | 9..261 | 1265 | 100 | Plus |
| 3R | 32079331 | 3R | 20211746..20211964 | 259..477 | 1095 | 100 | Plus |
| 3R | 32079331 | 3R | 20212462..20212614 | 477..629 | 765 | 100 | Plus |
| 3R | 32079331 | 3R | 7597008..7597149 | 458..317 | 215 | 76.8 | Minus |
Blast to na_te.dros performed 2014-11-27 00:29:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1062..1094 | 52..20 | 129 | 87.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2378 | 52..21 | 124 | 87.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1558..1592 | 52..18 | 121 | 82.9 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1093..1124 | 54..23 | 115 | 84.4 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1116..1145 | 52..23 | 114 | 86.7 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1083..1112 | 52..23 | 114 | 86.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6764 | 52..23 | 114 | 86.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6785 | 52..23 | 114 | 86.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..6806 | 52..23 | 114 | 86.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6789..6818 | 52..23 | 114 | 86.7 | Minus |
FMO11293.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:12:20 Download gff for
FMO11293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34139-RD | 860..1870 | 2..1012 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:40 Download gff for
FMO11293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34139-RB | 860..1870 | 2..1012 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:06 Download gff for
FMO11293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nlg4-RC | 879..1889 | 2..1012 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:06 Download gff for
FMO11293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20211747..20211964 | 260..477 | 100 | -> | Plus |
| 3R | 20212463..20212612 | 478..627 | 100 | -> | Plus |
| 3R | 20211252..20211505 | 2..259 | 98 | -> | Plus |
| 3R | 20212734..20213122 | 628..1012 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:40 Download gff for
FMO11293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16036974..16037227 | 2..259 | 98 | -> | Plus |
| arm_3R | 16037469..16037686 | 260..477 | 100 | -> | Plus |
| arm_3R | 16038185..16038334 | 478..627 | 100 | -> | Plus |
| arm_3R | 16038456..16038844 | 628..1012 | 97 | | Plus |
