FMO11295.5prime Sequence
1138 bp (1029 high quality bases) assembled on 2011-12-02
> FMO11295.5prime
CAGTCGACATGCGCGCCACCATCGAGTTCGAGGAGTGCCTGAAGGATTCT
CCCAGATTCAGACAATTTGTTTCCAAGGAGGAGAGCGACATCGAGCACTT
GGAGCAGCGCTTGGAGAAAATCATCAAGCTGTGCAATGTGGCCGTGGACT
CGGGCAAGGAGTATGTCAAGAACCAGAGCGCCTTTGCCATGTCCCTGTGG
GATCTACAACAGCACTTTCTCGACAATAAGAACGCGCACAATGCGCTGGG
CAAGCTGATTCACTGCTTCCAGGAGATGAACAAGTTCCACACCATACTCT
TGGATCAGGCTAGCCGCACGGTGCTTAAAAATCTCAGTGTGTTCGTGAAG
GACGACATTAACCAGGTGAAGGACTATAAGGGACATTTTCTCAAGGTTTC
CGAAGGCTATGACAATGCGCTGATTAAAAACGCTCAGGCCAGCAAAAACC
GACCGCAGGAGATGCAGGAGGCTGCCAATATCCTTTCTGCCTCGAAATCG
TGCTTCCAACACACCGCTCTGGATTATGTCAACTATATAACGCTAGCGCA
GGCTCGCAAGGTCCCCTCAATACTATCCACGCTGTTGGATTACTATCAGG
CGTGCGTGACCTATTACCACCAGGGCTTCGATCTGTGCAACGACTTCGAC
GAGTTCTTTAAGAATATCAGCGAGGATTTGAACGCTTTGCGCGGTGACTA
TCAGCAGCTGGAGAAGGCCATGCAGAATCGCCATATGAGCGTTAATCGCT
ACTGCGACTCGAACACCAATAGCACGTCCAACAAGATCGAGGGCTACCTA
TTCAAGAAGAAGTCCAAGGGCTTCAAGACCTGGTGCCGACGATGGTTCTA
CCTCAGCGACAACCAGCTCGTATATAGAAAACGCAGCAACGAGGACTCGT
TCTCGGTCATGGAGGAGGATCTGCCGCATCTGCAGCGTGCGCCCGGGTAA
ACGAGGGTGACCGTCGTTTCTGCTTCGAGGTCATCTTCGCGGACCAAATC
TCACAATCCTGCAAGCTGACCTCCGCTGACATGCTTCCCTGGTGGAATTC
GCGCTACAGCACAGCATCGGTGCTGCATCCAGCATGACTTCCCACCACAT
CCTTCGCGGACACAAATTCGACGAAACGCAACCCTAAT
FMO11295.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:28:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CenB1A-RA | 3464 | CG6742-RA | 390..1467 | 9..1089 | 5135 | 98.8 | Plus |
CenB1A-RB | 2565 | CG6742-RB | 41..568 | 580..1089 | 2060 | 93.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:28:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23121336..23121632 | 581..877 | 1485 | 100 | Plus |
3R | 32079331 | 3R | 23120611..23120782 | 267..438 | 860 | 100 | Plus |
3R | 32079331 | 3R | 23120839..23120985 | 435..581 | 735 | 100 | Plus |
3R | 32079331 | 3R | 23120264..23120383 | 59..178 | 600 | 100 | Plus |
3R | 32079331 | 3R | 23120459..23120555 | 177..273 | 485 | 100 | Plus |
3R | 32079331 | 3R | 23121826..23121934 | 876..986 | 440 | 97.3 | Plus |
3R | 32079331 | 3R | 23118789..23118841 | 9..61 | 265 | 100 | Plus |
3R | 32079331 | 3R | 23122020..23122104 | 1006..1089 | 205 | 90.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:28:51 has no hits.
FMO11295.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:12:18 Download gff for
FMO11295.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cenB1A-RC | 387..1473 | 9..1101 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:20 Download gff for
FMO11295.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CenB1A-RA | 390..1476 | 9..1101 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:50 Download gff for
FMO11295.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CenB1A-RA | 390..1476 | 9..1101 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:50 Download gff for
FMO11295.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23118789..23118841 | 9..61 | 100 | -> | Plus |
3R | 23120267..23120383 | 62..178 | 100 | -> | Plus |
3R | 23120461..23120554 | 179..272 | 100 | -> | Plus |
3R | 23120617..23120781 | 273..437 | 100 | -> | Plus |
3R | 23120842..23120985 | 438..581 | 100 | -> | Plus |
3R | 23121337..23121632 | 582..877 | 100 | -> | Plus |
3R | 23121828..23121944 | 878..997 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:20 Download gff for
FMO11295.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18944511..18944563 | 9..61 | 100 | -> | Plus |
arm_3R | 18945989..18946105 | 62..178 | 100 | -> | Plus |
arm_3R | 18946183..18946276 | 179..272 | 100 | -> | Plus |
arm_3R | 18946339..18946503 | 273..437 | 100 | -> | Plus |
arm_3R | 18946564..18946707 | 438..581 | 100 | -> | Plus |
arm_3R | 18947059..18947354 | 582..877 | 100 | -> | Plus |
arm_3R | 18947550..18947666 | 878..997 | 95 | -> | Plus |