Clone FMO11295 Report

Search the DGRC for FMO11295

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:112
Well:95
Vector:pMK33-CFH-BD
Associated Gene/TranscriptcenB1A-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11295.5prime Sequence

1138 bp (1029 high quality bases) assembled on 2011-12-02

> FMO11295.5prime
CAGTCGACATGCGCGCCACCATCGAGTTCGAGGAGTGCCTGAAGGATTCT
CCCAGATTCAGACAATTTGTTTCCAAGGAGGAGAGCGACATCGAGCACTT
GGAGCAGCGCTTGGAGAAAATCATCAAGCTGTGCAATGTGGCCGTGGACT
CGGGCAAGGAGTATGTCAAGAACCAGAGCGCCTTTGCCATGTCCCTGTGG
GATCTACAACAGCACTTTCTCGACAATAAGAACGCGCACAATGCGCTGGG
CAAGCTGATTCACTGCTTCCAGGAGATGAACAAGTTCCACACCATACTCT
TGGATCAGGCTAGCCGCACGGTGCTTAAAAATCTCAGTGTGTTCGTGAAG
GACGACATTAACCAGGTGAAGGACTATAAGGGACATTTTCTCAAGGTTTC
CGAAGGCTATGACAATGCGCTGATTAAAAACGCTCAGGCCAGCAAAAACC
GACCGCAGGAGATGCAGGAGGCTGCCAATATCCTTTCTGCCTCGAAATCG
TGCTTCCAACACACCGCTCTGGATTATGTCAACTATATAACGCTAGCGCA
GGCTCGCAAGGTCCCCTCAATACTATCCACGCTGTTGGATTACTATCAGG
CGTGCGTGACCTATTACCACCAGGGCTTCGATCTGTGCAACGACTTCGAC
GAGTTCTTTAAGAATATCAGCGAGGATTTGAACGCTTTGCGCGGTGACTA
TCAGCAGCTGGAGAAGGCCATGCAGAATCGCCATATGAGCGTTAATCGCT
ACTGCGACTCGAACACCAATAGCACGTCCAACAAGATCGAGGGCTACCTA
TTCAAGAAGAAGTCCAAGGGCTTCAAGACCTGGTGCCGACGATGGTTCTA
CCTCAGCGACAACCAGCTCGTATATAGAAAACGCAGCAACGAGGACTCGT
TCTCGGTCATGGAGGAGGATCTGCCGCATCTGCAGCGTGCGCCCGGGTAA
ACGAGGGTGACCGTCGTTTCTGCTTCGAGGTCATCTTCGCGGACCAAATC
TCACAATCCTGCAAGCTGACCTCCGCTGACATGCTTCCCTGGTGGAATTC
GCGCTACAGCACAGCATCGGTGCTGCATCCAGCATGACTTCCCACCACAT
CCTTCGCGGACACAAATTCGACGAAACGCAACCCTAAT

FMO11295.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
CenB1A-RA 3464 CG6742-RA 390..1467 9..1089 5135 98.8 Plus
CenB1A-RB 2565 CG6742-RB 41..568 580..1089 2060 93.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23121336..23121632 581..877 1485 100 Plus
3R 32079331 3R 23120611..23120782 267..438 860 100 Plus
3R 32079331 3R 23120839..23120985 435..581 735 100 Plus
3R 32079331 3R 23120264..23120383 59..178 600 100 Plus
3R 32079331 3R 23120459..23120555 177..273 485 100 Plus
3R 32079331 3R 23121826..23121934 876..986 440 97.3 Plus
3R 32079331 3R 23118789..23118841 9..61 265 100 Plus
3R 32079331 3R 23122020..23122104 1006..1089 205 90.7 Plus
Blast to na_te.dros performed on 2014-11-27 00:28:51 has no hits.

FMO11295.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-02 09:12:18 Download gff for FMO11295.5prime
Subject Subject Range Query Range Percent Splice Strand
cenB1A-RC 387..1473 9..1101 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:20 Download gff for FMO11295.5prime
Subject Subject Range Query Range Percent Splice Strand
CenB1A-RA 390..1476 9..1101 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:50 Download gff for FMO11295.5prime
Subject Subject Range Query Range Percent Splice Strand
CenB1A-RA 390..1476 9..1101 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:50 Download gff for FMO11295.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23118789..23118841 9..61 100 -> Plus
3R 23120267..23120383 62..178 100 -> Plus
3R 23120461..23120554 179..272 100 -> Plus
3R 23120617..23120781 273..437 100 -> Plus
3R 23120842..23120985 438..581 100 -> Plus
3R 23121337..23121632 582..877 100 -> Plus
3R 23121828..23121944 878..997 95 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:20 Download gff for FMO11295.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18944511..18944563 9..61 100 -> Plus
arm_3R 18945989..18946105 62..178 100 -> Plus
arm_3R 18946183..18946276 179..272 100 -> Plus
arm_3R 18946339..18946503 273..437 100 -> Plus
arm_3R 18946564..18946707 438..581 100 -> Plus
arm_3R 18947059..18947354 582..877 100 -> Plus
arm_3R 18947550..18947666 878..997 95 -> Plus