FMO11302.5prime Sequence
1134 bp (988 high quality bases) assembled on 2011-12-09
> FMO11302.5prime
CAGTCGACATGGTGCGCTCCACTGCCCGAGCCTCGTTGCGCAAGGCAGCA
TCCACACTTTCGTCTAACTCGACACCGGAGGCTCCAGCTATGGCACCCGC
TGCTTCGACTGCTCCAGCTGCTCCGGCTGCTCCAGCTGCTCCAGCTGCTC
CTCTTGTCCGCGAACGATCGCTGGCCAAGCGGATCAAGGCACCTCCCTGT
GATCGTTGTCCCCACTGCGATCGTACCTTTAATCCCAAGGCATTTGATCG
CCACGTAGAATGGTGTAAGGAAAAGGCCATTCAGGCCACCATGAAGTCCA
CCAACAGCCAGGAGACCAGCAAAGCCAAGGAGCGCCTGGAGGCCAGGAAG
CAGTACAGGCCGCCCAATCTGAAGACCAAGAGATCCCTCGCCAGGGATAA
GTACTCCGGTAACCACGAGGAGGTTCTGGAAGCGGGTGAGATGACAACAC
CCAAACCAAACCTGATGTCCCATTCGATGACGTCGTCCGTGCACAGTGAT
AACACTCAAGCTCAAGTCTCCAGCTCGCGAGGAGGAAGTCGTGCCAAAGC
AAACTCCACGGTTACCCAGAACCAAGTGAACCTGTTCAATGAGGATCCAC
CATCATCGCCGCCGCCCAGGGAACGATCTGCACTGCGCCGTTCCAAGCGC
ACTCAGCGGGAATCCTGCATAGAAATTGACGAGACCATGGAACAACTAAG
GCGGAACGGCAGTGGAGATGCTCTCCAGTTGGCCAAACTCGATTGCGTGG
AAGCGCCAGTTCTCCAGCCAGCTAGACGACGCAAGAGAGGGCCCAAGACG
GATAAACTAGATGCGGTCGAAAAGCAAATCTGCCTTCCCCAAGTAACCAT
GACATTTGACGAGCTCAATGGGTTAATCAAGCGCAAAGGCGGCACGCCCA
TTTGCAATGTGAAATGGATGAGCAGGAATCGGTAGTTCTGGTCTCCAAGC
ACCAATCATCAGCAACCCTAGTGCGTCAGGCGCGTCGTCGGATTCCCCAC
CAAGAAAACCCCGATCTGGAGTTGCGTGCCCTGCATCGTCATGTCAGCAA
TTCCAAAGATGTACAGTATGCTCCTGAACTCTAGCTATTGCCATAGCAAG
AATCAGTCAAATGTGTAACTCGATCCGAGGAAGA
FMO11302.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:41:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30460-RH | 4400 | CG30460-RH | 569..1701 | 9..1131 | 5195 | 98.1 | Plus |
| CG30460-RF | 6303 | CG30460-RF | 930..2062 | 9..1131 | 5195 | 98.1 | Plus |
| CG30460-RE | 6950 | CG30460-RE | 1577..2709 | 9..1131 | 5195 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:41:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17071119..17071505 | 889..503 | 1935 | 100 | Minus |
| 2R | 25286936 | 2R | 17071971..17072336 | 374..9 | 1830 | 100 | Minus |
| 2R | 25286936 | 2R | 17071727..17071855 | 502..374 | 645 | 100 | Minus |
| 2R | 25286936 | 2R | 17070474..17070678 | 1085..887 | 575 | 93.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:41:27 has no hits.
FMO11302.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:06 Download gff for
FMO11302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30460-RE | 565..1675 | 1..1102 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:30:48 Download gff for
FMO11302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30460-RE | 1568..2678 | 1..1102 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:13:29 Download gff for
FMO11302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30460-RE | 1568..2678 | 1..1102 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:13:29 Download gff for
FMO11302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17070455..17070676 | 889..1102 | 92 | <- | Minus |
| 2R | 17071120..17071505 | 503..888 | 100 | <- | Minus |
| 2R | 17071727..17071855 | 374..502 | 100 | <- | Minus |
| 2R | 17071972..17072341 | 1..373 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:30:48 Download gff for
FMO11302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12957960..12958181 | 889..1102 | 92 | <- | Minus |
| arm_2R | 12958625..12959010 | 503..888 | 100 | <- | Minus |
| arm_2R | 12959232..12959360 | 374..502 | 100 | <- | Minus |
| arm_2R | 12959477..12959846 | 1..373 | 98 | | Minus |
