FMO11303.5prime Sequence
914 bp (910 high quality bases) assembled on 2011-12-09
> FMO11303.5prime
CAGTCGACATGGATCAGCCACTGGTGGTGCAGGCGGAGTACTCCTTCATG
GGCAGCAATAACGACGAGCTGTGCTTCCAGAAGGGCGATGTCATCACGGT
TACCCAGCGCGAGGATGGTGGCTGGTGGGAGGGAACGCTGAACGATAAGA
CTGGCTGGTTTCCCAGCAACTATGTGAATGAGTGCAAGGTGCAGCTGCCT
CTAACGGAGACCATAAGGCCGCCGGAGGAGATCCAGGAGTATCGGTCTGT
GGTGCTCAAGGATCTGCTTGACTCGGAGCGCGCCCATGTGGCCGAGCTGC
AGGGTCTGCTCGAGAATTTCTTGGAGCCCATGCAACAGACGCAAATACTC
AGTCAGGATGAGTACGCCCAGCTGATGTGTAACTTTGTAGAGATTGTGCG
TACGCACGAGGATTTGCTTATCCAGATCGAGGAGTGCAACGATCGAGTGG
GTTTTTCTATTTCTCACCAGCGCCCCCTTGATGAAGAAGGTGCACCAGGC
GTACTGCGCTGCCCATCCAAAGGCCATTGTCATACTGGATAAGTACAAGG
ACGAGCTGGAAAAGTATATGGAACGACAGGGCGCAGCCACTCCTGGATTA
CTTGTGCTCACGACGGGTCTATCAAAGCCCTTCCGGCGACTGGACAAATA
CTCGGCCATGCTGCAGGAGCTGGAGCGGCATATGGAGAGCAGTCATCCGG
ATCGCGGCGACACCCAGCGGAGTGTTGCCGTGTACAAAGACATAGCTGCC
ACTGCTCGGCCACCCGTCGCCAAAAGGAGCTGGAGCTGCAAGTGCTCACG
GGGCCAGTGCGTGGATGGCAAGGCCAAGAGCTGAGCACCCTCGGGGACAT
CATCCACATGGGCAGCGTTGCAGTTGGGAGCTGATCATCCCGAACCGATA
CTTTTGTGCTCTTC
FMO11303.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:41:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RtGEF-RE | 2995 | CG10043-RE | 509..1411 | 9..914 | 4320 | 98.8 | Plus |
| RtGEF-RH | 4343 | CG10043-RH | 509..1411 | 9..914 | 4320 | 98.8 | Plus |
| RtGEF-RG | 3938 | CG10043-RG | 149..1051 | 9..914 | 4320 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:41:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20355410..20355747 | 9..346 | 1690 | 100 | Plus |
| 2L | 23513712 | 2L | 20356085..20356439 | 549..904 | 1605 | 98.6 | Plus |
| 2L | 23513712 | 2L | 20355806..20356007 | 347..549 | 905 | 97.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:41:33 has no hits.
FMO11303.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:07 Download gff for
FMO11303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rtGEF-RC | 489..1401 | 1..914 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:30:52 Download gff for
FMO11303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RtGEF-RG | 139..1051 | 1..914 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:13:33 Download gff for
FMO11303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RtGEF-RG | 139..1051 | 1..914 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:13:33 Download gff for
FMO11303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20355400..20355747 | 1..346 | 98 | -> | Plus |
| 2L | 20355806..20356006 | 347..548 | 97 | -> | Plus |
| 2L | 20356085..20356439 | 549..904 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:30:52 Download gff for
FMO11303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20355400..20355747 | 1..346 | 98 | -> | Plus |
| arm_2L | 20355806..20356006 | 347..548 | 97 | -> | Plus |
| arm_2L | 20356085..20356439 | 549..904 | 98 | -> | Plus |
