FMO11304.5prime Sequence
1090 bp (942 high quality bases) assembled on 2011-12-09
> FMO11304.5prime
CAGTCGACATGTCGGCGCAATATCAAAGATTCCTGAAAGTACTAGAAAAG
TGGCCAGCGGAGAAATCAAAAGTCGGCAGCGGAGAGTGGACAGCAGAGCC
GGCTATCAAGATGAGTGGGGCCAAGATCATATCGGGCACGGCGGTGGCCA
AATCCATTCGCGAAGAGCTGCGTAACGAGGTGACGGCTATGAGCAAGCAA
TTGGCGGATTTTGTGCCCGGCTTAAGGATTGTCCAGGTTGGTGGACGTGA
GGACTCCAACGTTTACATCCGCATGAAGATCAAGGCGGCTACGGAGATCG
GTATCGATGCCGCCCACGTCCAGCTGCCCCGATCCATCACCGAGGTGGAA
TTGCTCGATAAGATAAACGATCTGAACGAGGACCCCCGGGTGCACGGCAT
CATAGTGCAAATGCCCCTGGATTGTGACACACCCATCGATTCGCACCGAA
TTACGGACGCCGTTTCCCCGGAGAAGGATGTTGACGGCTTGCACACGGTT
AACGAAGGTCGCCTGGCCATCGGTGACCTTGGTGGTTTCCTGCCCTGCAC
TCCTTGGGGTTGCCTGGAGTTAATTCGCCGTTCTGGAGTAGAGATCGCCG
GAGCCAGGGCTGTGGTTCTGGGACGCAGCAAGATCGTGGGCACTCCCGCC
GCCGAACTGCTCAAGTGGGCCAATGCCACGGTCACAGTGTGCCACTCAAA
GACCCGCAACCTGGAGGAGATCACCCGAAGTGCAGACATTCTGGTGGTCG
GAATTGGAGTGGCCGAGATGGTTAAAGGGATCGTGGATAAAGCCCGGAGC
AGTGGTCATCGATTGCGGCATCAATGTGAAGCCAGACGCCAGCAAAGGCC
AGTGGCAGCAAGCTGGTCGGGGACGTGACTACGCGGAAGCTCTCCAAGTG
CAGGACATTTGACGCCAGTGCCCGCGGCGGTGGGGACCCATGACGGTGCC
ATGCTTATGAAAAACACCCGTGCGATCCTGCGGCCCGATTCCCTGACCGT
CTTGCTAAGAAGCCAAGTGGACCCTTTCAAACGCTGCCCTCAGCCCAACG
TTCCGTGCCAAGCGAATATGTGATGGCCTGTGCCCAAAAC
FMO11304.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:41:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pug-RD | 3160 | CG4067-RD | 86..1164 | 9..1089 | 4875 | 97.6 | Plus |
| pug-RB | 3273 | CG4067-RB | 199..1277 | 9..1089 | 4875 | 97.6 | Plus |
| pug-RA | 3098 | CG4067-RA | 92..1102 | 77..1089 | 4535 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:41:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10700217..10700690 | 361..835 | 2325 | 99.8 | Plus |
| 3R | 32079331 | 3R | 10699885..10700095 | 152..362 | 1055 | 100 | Plus |
| 3R | 32079331 | 3R | 10700998..10701175 | 832..1010 | 470 | 92.9 | Plus |
| 3R | 32079331 | 3R | 10699748..10699822 | 77..151 | 375 | 100 | Plus |
| 3R | 32079331 | 3R | 10696732..10696802 | 9..79 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:41:40 has no hits.
FMO11304.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:08 Download gff for
FMO11304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pug-RD | 83..1131 | 9..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:30:57 Download gff for
FMO11304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pug-RB | 215..1263 | 9..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:13:37 Download gff for
FMO11304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pug-RB | 199..1247 | 9..1059 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:13:37 Download gff for
FMO11304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10696732..10696802 | 9..79 | 100 | -> | Plus |
| 3R | 10699751..10699822 | 80..151 | 100 | -> | Plus |
| 3R | 10699885..10700095 | 152..362 | 100 | -> | Plus |
| 3R | 10700219..10700690 | 363..835 | 99 | -> | Plus |
| 3R | 10701002..10701224 | 836..1059 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:30:57 Download gff for
FMO11304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6522454..6522524 | 9..79 | 100 | -> | Plus |
| arm_3R | 6525473..6525544 | 80..151 | 100 | -> | Plus |
| arm_3R | 6525607..6525817 | 152..362 | 100 | -> | Plus |
| arm_3R | 6525941..6526412 | 363..835 | 99 | -> | Plus |
| arm_3R | 6526724..6526946 | 836..1059 | 91 | | Plus |
