FMO11306.5prime Sequence
1136 bp (896 high quality bases) assembled on 2011-12-09
> FMO11306.5prime
CAGTCGACATGGAGAGCACGACAAAGGTGAAGGTGAACGGCTTTGTGGAA
TCGACGTCGTCTTCAGCGGCGCCGGCAATCCAGACAAAGAGTACCACCGG
ATTCGATGCCGAGCTGCAGGATGGGCTGAGTTGTAAGGAACTGTTCCAGA
ACGGTGAGGGACTCACCTACAACGACTTTCTCATACTGCCCGGCTACATA
GACTTCACCGCCGAGGAGGTCGATCTCAGTTCGCCACTGACCAAGTCGCT
GACATTGCGAGCACCGCTGGTTAGTTCGCCCATGGACACGGTAACCGAAT
CGGAGATGGCCATCGCCATGGCGCTGTGTGGTGGCATTGGCATCATCCAT
CACAACTGCACGCCGGAATACCAGGCGTTGGAGGTGCACAAGGTTAAGAA
GTACAAGCACGGCTTCATGCGCGACCCCTCGGTGATGTCGCCCACGTATA
TTGTGGGGGATGTGTTGGAGGCGCGGCGGAAGAACGGATTCACCGGCTAT
CCGGTCACCGAGAACGGCAAACTTGGCGGCAAGCTGCTGGGCATGGTCAC
GTCGCGAGACATTGACTTCCGCGAGAACCAGCCGGAGGTCCTGCTGGCCG
ACATCATGACCACCGAACTGGTCACCGCTCCCAATGGCATCAATCTGCCC
ACGGCAAACGCTATTCTCGAGAAGAGCAAGAAGGGCAAACTGCCGATTGT
GAATCACGCCGGCGAACTGGTGGCCATGATTGCCCGCACGGATTTGAAGA
AGGCCCGCTCCTACCCGAATGCCTCCAAGGACTCCAATAAGCAGCTCCTC
GTCGGCGCTGCCATCGGAACGCGATCGGAGGACAAGGCGCGCCTGGCTCT
GCTGGTGGCCAACGGCGTGGACGTTATCATCCTTTGATTCATCCGCAAGG
CAACTCCGTCTACCAGTGAGATGATCAAGTAACATTAAGGAAACCTATCC
CGAACTACAGGTCATTGGTGGCAATGGTGGTAACCACGTGCCCAGGCCAA
AAATCCTCATTGATGCCAGCGTCGATGGACTGCTTGTGGCCATGGTTCCA
GGTTCCATCTGCATCACCCAGTAAGTGATGGCCTTGCGAATGTTCCCTCA
GGCAAATTTCTGCTCAAACAGGGTTCACTTACGCTC
FMO11306.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:41:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ras-RD | 2810 | CG1799-RD | 303..1390 | 9..1103 | 4995 | 97.7 | Plus |
| ras-RE | 2415 | CG1799-RE | 199..1286 | 9..1103 | 4995 | 97.7 | Plus |
| ras-RA | 2519 | CG1799-RA | 303..1390 | 9..1103 | 4995 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:41:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10746420..10747074 | 323..978 | 2970 | 98.2 | Plus |
| X | 23542271 | X | 10745820..10745983 | 9..172 | 820 | 100 | Plus |
| X | 23542271 | X | 10746072..10746226 | 169..323 | 760 | 99.4 | Plus |
| X | 23542271 | X | 10747492..10747590 | 985..1084 | 330 | 91 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:41:47 has no hits.
FMO11306.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:08 Download gff for
FMO11306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ras-RA | 1010..2097 | 9..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:31:03 Download gff for
FMO11306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ras-RC | 105..1192 | 9..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:13:40 Download gff for
FMO11306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ras-RA | 303..1390 | 9..1103 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:13:40 Download gff for
FMO11306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10745820..10745983 | 9..172 | 100 | -> | Plus |
| X | 10746076..10746226 | 173..323 | 100 | -> | Plus |
| X | 10746421..10747072 | 324..976 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:31:03 Download gff for
FMO11306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10639853..10640016 | 9..172 | 100 | -> | Plus |
| arm_X | 10640109..10640259 | 173..323 | 100 | -> | Plus |
| arm_X | 10640454..10641105 | 324..976 | 98 | -> | Plus |
