FMO11307.5prime Sequence
1131 bp (1012 high quality bases) assembled on 2011-12-09
> FMO11307.5prime
CAGTCGACATGGAAGACGGTCACTCGAAAACCGTCGAACAGTCCCTCAAC
TTCTTCGGAACGGACCCCGAGCGCGGCTTAACCCTCGACCAGATCAAGGC
TAACCAGAAGAAATACGGACCCAATGAGTTGCCGACTGAGGAAGGAAAGA
GCATCTGGCAGCTGGTCTTGGAGCAGTTCGACGATCTGCTGGTGAAGATT
CTGCTGTTGGCAGCCATCATCTCATTTGTTCTCGCCCTGTTTGAGGAACA
CGAGGAAACGTTCACTGCATTTGTAGAGCCCCTAGTTATTTTACTTATCC
TGATAGCCAACGCCGTGGTGGGAGTATGGCAGGAGCGTAACGCCGAGTCG
GCCATTGAGGCCCTCAAGGAGTACGAGCCTGAGATGGGCAAGGTGGTGCG
CCAGGACAAGTCCGGCATCCAGAAGGTGCGCGCGAAAGAGATCGTGTCCG
TTTACCTGGTTGAGGTGTCTGTCGGTGACAAGATCCCTGCCGATATCCGT
ATCACCCACATCTACTCGACCACCCTTAGGATCGATCAGTCCATCCTCAC
CGGTGAGTCGGTCTCCGTCATCAAGCACACCGATGCCATCCCCGATCCCC
GCGCCGTCAACCAGGACAAGAAGAACATCCTGTTCTCCGGCACCAACGTC
GCAGCCGGCAAGGCCCGTGGCGTCGTCATCGGCACTGGCCTGAGCACCGC
CATCGGCAAGATCCGTACTGAGATGTCCGAGACCGAGGAGATCAAGACCC
CCCTGCAGCAGAAACTGGACGAGTTCGGTGAGCAGCTGTCCAAAGGTCAT
TTCCCGTCATTTGCGTTGCCGTGTGGGCCATCAACATCGGCCACTTCAAC
GACCCCGCTCACGGAGGCTCCTGGATCAAGGGTGCCATCTACTACTTCAG
ATCGCCGTCGCTCTGGCTGTGGCTGCCATCCCCGAGGGTCTGCCCGCCGT
CATCACCACCTGTCTGGCTCTGGGCACCCGCCGCATGGCCAGAAGAATGC
CATCGTCCGCTCCTGCCCTCGTGGGAGACCCTGGGGCTGCACACTCTGTC
ATCTGCTCTGATAGAACGCAACCTCACCACCCACAATGTTCCGTTTCCCG
CATGTTCATCCTCGAACAGGTTGAACGCACG
FMO11307.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:41:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ca-P60A-RI | 6306 | CG3725-RI | 661..1783 | 9..1129 | 5140 | 97.8 | Plus |
| Ca-P60A-RF | 3839 | CG3725-RF | 661..1783 | 9..1129 | 5140 | 97.8 | Plus |
| Ca-P60A-RH | 5028 | CG3725-RH | 217..1339 | 9..1129 | 5140 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:41:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23931426..23932329 | 1129..228 | 3805 | 96.9 | Minus |
| 2R | 25286936 | 2R | 23932667..23932784 | 126..9 | 590 | 100 | Minus |
| 2R | 25286936 | 2R | 23932404..23932490 | 229..143 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:41:53 has no hits.
FMO11307.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:09 Download gff for
FMO11307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ca-P60A-RD | 90..1224 | 1..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:31:08 Download gff for
FMO11307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ca-P60A-RH | 208..1342 | 1..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:13:43 Download gff for
FMO11307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ca-P60A-RH | 208..1342 | 1..1131 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:13:43 Download gff for
FMO11307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23931423..23932329 | 228..1131 | 97 | <- | Minus |
| 2R | 23932406..23932488 | 145..227 | 100 | <- | Minus |
| 2R | 23932574..23932591 | 127..144 | 100 | <- | Minus |
| 2R | 23932667..23932790 | 1..126 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:31:08 Download gff for
FMO11307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19818946..19819852 | 228..1131 | 97 | <- | Minus |
| arm_2R | 19819929..19820011 | 145..227 | 100 | <- | Minus |
| arm_2R | 19820097..19820114 | 127..144 | 100 | <- | Minus |
| arm_2R | 19820190..19820313 | 1..126 | 96 | | Minus |
