Clone FMO11308 Report

Search the DGRC for FMO11308

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:113
Well:8
Vector:pMK33-CFH-BD
Associated Gene/Transcriptens-RE
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11308.5prime Sequence

1126 bp (1011 high quality bases) assembled on 2011-12-09

> FMO11308.5prime
CAGTCGACATGGCGAGTCTTGGGGGCCAACACGGAAATATTTCGACTAAT
CCAGAAGTGGAAAACACAGCCAAGCGACCCGAAAGTCGCGAGGGCAGCGC
CGAGCGAAAAGCGTCCAAAGACCGTGAGGAGAAACTAAAATATGCCCGCG
ATCGCCAAAATGAGGAGCGCCACCGGAAAATCGAGGAACTGCGTGCCCAG
GCGGAGGCCGCCCAGCGGTACCGTGAACAAAAGGAGGAGGAGCGCCGTCG
ACGCATCGAGGAGATCCGTACCCGGGACACAGAGAAGCGCCACCAGGTGG
AGGAGCGCAAGAAGGCCATTTTCGAGGCCGAGAAGGAGCGCCGCGAGTAC
ATCCTCAAAAAGAATCAGGAACGCGAGTCCCGGATAGAAGTGAAAAAACG
GGACAGAAACTCCATCGGCTTCGCATTTGGCTCCTCGACTCCCCGCCTGC
TGGATGTGCCCGCGGATTATGGTCTGGTATCGCCCAGTGCCTTTTGGGGT
CAGCGGAGGTCCACATCTATATCGAACGTAGCGGGCGCCTCGCTCACACG
TCGAAGTTCAGAGCGTGAACTTGCCGACAGTGGTGCTAAGAAGCGTGCCT
CCTCATCGACGGACCGACAAGATGAAGATAGCGTTGACTCATCACCCATG
GTGTTCCGAAGCGTTTACCGCAGGAAAACGGACCTTATGCCGACAATACC
TAGCCCCCGAGACGGGCATTATGGTTCGCGAGGCTCCCTGAGCTCGACGC
CGGCCAGAACCCCAGGCTCGCGATCGGGAAATGCCACGCCCGGCGGACAC
TTCAATAACTCAAGGCCCGGCAGCGCCATGTCCACATCGACAAACATGTC
CACATCCGGGCTGGTGCCCAGGCGACCGGCAACGGCACCCCGGAAACCGA
GGCCCGCCAGTATCGCCGGAACGGCATGTCTCTCGAGGAGATTAACAAAC
TCCAGAGGGATCAGAAGCCGCCCCGTGAAGAAGGACAGCCGCCTCGCCAT
CCGCACAAACGACCACCCAAACGAACTGCAAACCTTATGTCCACCCTCCC
TGAATCGGTGACCTCCAGCTCATCGCCGGCCTGAAACAAGCCGCCCGAAA
AGAAAGAAAGCCCTTCCGAAGCCGGA

FMO11308.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
ens-RL 4674 CG14998-RL 49..1111 9..1076 5140 99.2 Plus
ens-RE 4443 CG14998-RE 49..1111 9..1076 5140 99.2 Plus
ens-RK 4379 CG14998-RK 49..797 9..766 3645 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4131955..4132214 369..110 1300 100 Minus
3L 28110227 3L 4126989..4127164 938..764 830 99.4 Minus
3L 28110227 3L 4131748..4131892 510..366 725 100 Minus
3L 28110227 3L 4129650..4129792 766..624 715 100 Minus
3L 28110227 3L 4131121..4131238 624..507 590 100 Minus
3L 28110227 3L 4126800..4126932 1076..938 370 92.8 Minus
3L 28110227 3L 4133769..4133824 111..56 280 100 Minus
3L 28110227 3L 4134454..4134502 57..9 245 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:42:00 has no hits.

FMO11308.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:10 Download gff for FMO11308.5prime
Subject Subject Range Query Range Percent Splice Strand
ens-RE 41..1122 2..1091 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:31:12 Download gff for FMO11308.5prime
Subject Subject Range Query Range Percent Splice Strand
ens-RE 41..1122 2..1091 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:13:47 Download gff for FMO11308.5prime
Subject Subject Range Query Range Percent Splice Strand
ens-RE 41..1122 2..1091 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:13:47 Download gff for FMO11308.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4126789..4126931 939..1091 91 <- Minus
3L 4126989..4127162 766..938 99 <- Minus
3L 4129651..4129791 625..765 100 <- Minus
3L 4131121..4131236 509..624 100 <- Minus
3L 4131750..4131889 369..508 100 <- Minus
3L 4131956..4132212 112..368 100 <- Minus
3L 4133769..4133822 58..111 100 <- Minus
3L 4134454..4134510 2..57 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:31:12 Download gff for FMO11308.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4126789..4126931 939..1091 91 <- Minus
arm_3L 4126989..4127162 766..938 99 <- Minus
arm_3L 4129651..4129791 625..765 100 <- Minus
arm_3L 4131121..4131236 509..624 100 <- Minus
arm_3L 4131750..4131889 369..508 100 <- Minus
arm_3L 4131956..4132212 112..368 100 <- Minus
arm_3L 4133769..4133822 58..111 100 <- Minus
arm_3L 4134454..4134510 2..57 93   Minus