FMO11311.5prime Sequence
930 bp (930 high quality bases) assembled on 2011-12-09
> FMO11311.5prime
CAGTCGACATGGAAGAAAGTCAGCCAAGGTATGGCGCTATGTGGACATTC
AAGCTGGTGGCACCATACGTAATTGGCGGCTACCTATGCGGCCTCGCGGT
AACGCTCGCATGGAACTGGTGGCAGCTGGGCCACTTGGTTCTGGGTCTTA
ATCTCACCTTCGCGATTCCGGTGGCGCTTGTTCTGGCGGTCTTTTACAGC
AGGCCCGTAAGGTGCATTGTGACTTTGGCCCTTCCCTCGCTGTGCAGCTC
TCGGGGAAGGGCGTTCCTCATCAGCCTTGCCTTTGTTATTGCCGCAGTTG
GGCCTACGGCGAACATTCTAGCCAATTTGAAGGTGATGCTCCGCAGCCTC
GCTTGCGGACAGGAGCTATTGCGTCAGGCGCTTGGCCAGATGTTGGACGT
AATACTGGAGCCGGTGAATGCCATCCAGCTAGCGGTGGATCTCTTGATGC
GGGAAGTGCGTCGGGTGCTCAAGCTGGCCATGGTAGTGCTGTTACGCATT
CAGGACCAATTGATCGCAATTACAAGCATTTTTAAGTTTATCCGCCGCAG
AAAGCGTAATGAGTTTAACCACACACGGAATGTGAAGCACACCAGAAACT
ACACTTGGCTGAACAATAGATTCTCCTGTTTAATGTGCATGTGCTCCTGC
TGCTCATCCTGTCAAAGCACTGAGAGGTGCACCATATGTGGCCGATCTCT
GACTCTTTCAAATCGTAACCCCTGCGACACTCCTGGATGCAAAGGGGTTT
ATTGCGGTAAATGCTTTGAAAAGTCACACAATAAGTGTTGTCTGTGCAAT
CGACCAGTGGATTATGGTGATTTTTCCGACGTTACTGAGTAGACGACTCT
TCGGACTATTCTGAAAAGAGTCTTTAGCGAAAGGCAGTACAGGAAGACCT
GTGGAGGACACGCGCAGCTTTCTAGACCAT
FMO11311.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:41:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6845-RD | 1069 | CG6845-RD | 71..976 | 8..910 | 4455 | 99.7 | Plus |
| CG6845-RE | 2294 | CG6845-RE | 71..585 | 8..522 | 2575 | 100 | Plus |
| CG6845-RC | 2176 | CG6845-RC | 71..585 | 8..522 | 2575 | 100 | Plus |
| CG6845-RE | 2294 | CG6845-RE | 1810..2201 | 522..910 | 1885 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:41:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 146770..147082 | 210..522 | 1565 | 100 | Plus |
| 3L | 28110227 | 3L | 146503..146708 | 8..213 | 1030 | 100 | Plus |
| 3L | 28110227 | 3L | 148462..148645 | 523..706 | 920 | 100 | Plus |
| 3L | 28110227 | 3L | 148704..148835 | 707..838 | 660 | 100 | Plus |
| 3L | 28110227 | 3L | 148895..148963 | 844..910 | 245 | 97.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:41:13 has no hits.
FMO11311.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:05 Download gff for
FMO11311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6845-RD | 51..964 | 8..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:30:38 Download gff for
FMO11311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6845-RD | 71..984 | 8..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:13:23 Download gff for
FMO11311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6845-RD | 71..984 | 8..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:13:23 Download gff for
FMO11311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 146503..146706 | 8..211 | 100 | -> | Plus |
| 3L | 146772..147082 | 212..522 | 100 | -> | Plus |
| 3L | 148462..148645 | 523..706 | 100 | -> | Plus |
| 3L | 148704..148841 | 707..843 | 99 | -> | Plus |
| 3L | 148895..148971 | 844..918 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:30:38 Download gff for
FMO11311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 146503..146706 | 8..211 | 100 | -> | Plus |
| arm_3L | 146772..147082 | 212..522 | 100 | -> | Plus |
| arm_3L | 148462..148645 | 523..706 | 100 | -> | Plus |
| arm_3L | 148704..148841 | 707..843 | 99 | -> | Plus |
| arm_3L | 148895..148971 | 844..918 | 93 | | Plus |
