FMO11313.5prime Sequence
985 bp (880 high quality bases) assembled on 2011-12-09
> FMO11313.5prime
CAGTCGACATGGCGATGCTTCCGCGGTTGATTCTGCTGCCACTGCTCCTG
ATTTTGCGGATCTCGTGGAGCGATGCTGTGCCTTTGCAGCAGTTCTCACC
GGATCCCGATGACAGCATCGAGAACTGCGGCGGCGAGAATGGAGCTCCCC
TGATGACGCCCTGCAAGAGCGCCATTATCCTGGATGCCCAGACGAGCACC
ACGCTTAAGTGCGAGGACGACGAGCCGATGAGCTGGTGGACCAGTCAATC
GCAATATGTGCATGTGAAGTCCTTCGATAATACGGAGGATCCGGCTCGAC
CATTCGGAACTAGCCTGCATCTCATCGAAGTGACGGCTGACTATGTGGCA
GCCTACTATTGCGTGAAGACTTCGAAATTCAGTCAGATCGCCAAGGAGGA
GCAGTCGGACGAGGCGATGATCGAATTGGTTAATCAAGGATACGCCAGCT
CCATCTACGTGTACGTGAATGATCCGGACACTAAGCTGGTCGATAGTCAT
AACGTGGTGACGGCACGCCAGTATACCGACGTAGTCATACCCTGTAAACC
AGCCATGCCGGACACAGAGGTGCTGCTAGAGACCAGTAATGGAGAAATGC
ATTCCAGCAAATCTGTCGGTCGATACGATCCGCAACGGGGATTCACCATC
GAAATCCGAAGCATCGTGGATGGCGGAGACTACTACTGCCGACCCAATCC
GCCATTCCCGCATAACGAAGAGGAGATGACAGCATAGAAGTGCGCTTTAT
TGAAGACGGCAACCGCTGCAAAGCCGTGATCAGTCTCCGTGAGCATCACG
TCTTCACGGACACCACTCACCCTGATGCAGCATCCGCTACGTGATCGAAC
GAGAGTCTCGCGAGACGATGTCACAACTCAACGCGCTCAGAGCTGTGAGA
CCGCGAATGACATACATATGCAGAGAAATCAGACGATACCAACTATACTT
GCGGCATCACCCGCTTGAAATTACGACGCTTGGGA
FMO11313.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:42:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pvr-RG | 5153 | CG8222-RG | 325..1149 | 9..824 | 3900 | 98.9 | Plus |
| Pvr-RE | 5311 | CG8222-RE | 378..1202 | 9..824 | 3900 | 98.9 | Plus |
| Pvr-RN | 5246 | CG8222-RN | 325..1164 | 9..824 | 3720 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:42:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8228494..8229012 | 596..78 | 2595 | 100 | Minus |
| 2L | 23513712 | 2L | 8227670..8227826 | 752..597 | 735 | 99.4 | Minus |
| 2L | 23513712 | 2L | 8230125..8230194 | 78..9 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:42:14 has no hits.
FMO11313.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:11 Download gff for
FMO11313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvr-RG | 314..1157 | 1..832 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:31:22 Download gff for
FMO11313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvr-RE | 370..1213 | 1..832 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:13:54 Download gff for
FMO11313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvr-RE | 370..1213 | 1..832 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:13:54 Download gff for
FMO11313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8227670..8227826 | 597..752 | 99 | <- | Minus |
| 2L | 8228494..8229011 | 79..596 | 100 | <- | Minus |
| 2L | 8230125..8230200 | 1..78 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:31:22 Download gff for
FMO11313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8227670..8227826 | 597..752 | 99 | <- | Minus |
| arm_2L | 8228494..8229011 | 79..596 | 100 | <- | Minus |
| arm_2L | 8230125..8230200 | 1..78 | 94 | | Minus |
