FMO11314.5prime Sequence
1125 bp (1026 high quality bases) assembled on 2011-12-09
> FMO11314.5prime
CAGTCGACATGTTGGAAGTGGTTTTTGGGCGAGGAATGGAACTGGAGCCG
CGAGTGGCCATACTGCAGGACCTGCGCCTGCAGACCTTCGACTCCATTCG
ATTTGCCTCCTACCGCACCGCCTCCAAGCTGCGCTATATACAGAAGTCCA
CAAATCTGCACTTGGTGGACATATGGAATGTGATCGAGGCCTTTCGCGAG
AATGGCCTGAACACCCTGGAGCCGCAGAGCGAGGTGAGCGTGGCCAGGCT
GGAAACCCTGGTCTCCTCCCTCTATCATAACCTCAACAAGCGCCTGCCCA
CCGCTCAGCAGGTGCCTGTGGACTCGAAGGCGGGTCTGCTGCTCAACTGG
CTGCTGGCCGCGTACACAAGTGATAACTCGGGCAAGATACGCGTTTTCTC
CATCAAAGTGGCCCTGGCCACTATGTGCTCTGGCAAGCTGGTGGACAATC
TAAGATACATATTCTCGCAGATCTCGGATGGCGCTGGACAGCTGGTGGCC
TGGAAGCTGGGCGAGTTCCTGCGCGAAGTGCTGGCCCTGCCGGCGGCCGT
GTACGAGTCGCCCACATTCCACTACAAGGAGGGGCTCGAGGAGGAGATCT
TCCCGGCCGAGAATAAGGTGACGGTGAACGACTTTATGGCCACGCTGATG
TCCGAGCCGGGGCCGTCCTGCCTCGTCTGGCTGCCGCTGGTGCACCGGCT
GGCCACCGTGGAGACCATTGTGCATCCGACTGTCTGCTCTGTTTGCCACA
AGGAAAACTTCACCGGGTTTCGTTATCGCTGTCAGCGGTGTCACGCCTAC
CAGTTGTGTCAGGAGTGCTTCTGGCACGGCAAGACATCGCTGAATCACCA
GAACGATCACGAGGTCAAGGAGTACTCGAGCTACAAGTCGCCCAGCAAAC
AGATCGGTCACTCGCTGCGCAGAGCTTCCGCTGTGTGCCCGAGAAGACGG
TGCAGTGCTCCCTCGCTTCCCGACAGCCGGAGAAGACGCTCACTGTCGCA
CATCGTGCCGCCCTCGCCGCTGCCATCGCACAACGCCTTCTCGGAACCCT
CGGCCTCGTTACATGGACACCAAGCCCGCATCGTTCTCCGGTAGACCAGC
AGTAGATGCTCTCAGCAGCTCTTCG
FMO11314.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:42:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyb-RH | 2889 | CG8529-RH | 46..1126 | 9..1082 | 5120 | 98.7 | Plus |
| Dyb-RC | 2845 | CG8529-RC | 46..1126 | 9..1082 | 5120 | 98.7 | Plus |
| Dyb-RG | 2761 | CG8529-RG | 546..1607 | 28..1082 | 5025 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:42:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12448312..12448933 | 457..1072 | 2730 | 97.4 | Plus |
| 2R | 25286936 | 2R | 12447758..12448100 | 28..370 | 1715 | 100 | Plus |
| 2R | 25286936 | 2R | 12448161..12448248 | 369..456 | 425 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:42:22 has no hits.
FMO11314.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:12 Download gff for
FMO11314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dyb-RH | 49..1136 | 1..1082 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:31:26 Download gff for
FMO11314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dyb-RC | 39..1126 | 1..1082 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:13:57 Download gff for
FMO11314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dyb-RC | 39..1126 | 1..1082 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:13:57 Download gff for
FMO11314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12448163..12448248 | 371..456 | 98 | -> | Plus |
| 2R | 12447759..12448100 | 29..370 | 100 | -> | Plus |
| 2R | 12448312..12448944 | 457..1082 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:31:26 Download gff for
FMO11314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8335264..8335605 | 29..370 | 100 | -> | Plus |
| arm_2R | 8335668..8335753 | 371..456 | 98 | -> | Plus |
| arm_2R | 8335817..8336449 | 457..1082 | 97 | | Plus |
