FMO11315.5prime Sequence
1086 bp (973 high quality bases) assembled on 2011-12-09
> FMO11315.5prime
CAGTCGACATGAGCACCCCCACGGACTCGAAGGCGCCGTTGCGCCAGGTG
AAGCGCGTACAGTTCGGCATTTTGTCCCCTGATGAAATTCGTCGCATGTC
CGTCACCGAGGGTGGCGTCCAGTTTGCGGAGACAATGGAGGGCGGACGAC
CAAAGCTGGGCGGATTGATGGATCCGCGCCAGGGTGTCATAGACAGGACG
TCGCGCTGTCAGACGTGCGCCGGCAATATGACCGAGTGCCCCGGTCACTT
TGGACACATCGACCTGGCCAAACCAGTGTTCCACATCGGCTTCATCACCA
AGACAATTAAGATTTTGCGATGTGTGTGCTTCTACTGCTCCAAAATGTTG
GTCTCGCCACACAATCCAAAGATCAAGGAGATCGTTATGAAGTCTAGGGG
ACAGCCGCGTAAGCGCCTGGCCTACGTCTATGATCTGTGCAAGGGCAAGA
CGATTTGCGAGGGCGGCGAGGACATGGATCTCACCAAGGAGAACCAGCAG
CCGGATCCAAACAAAAAGCCCGGCCACGGCGGTTGCGGTCACTACCAGCC
GTCGATCCGGAGAACAGGACTGGATCTCACCGCCGAGTGGAAGCATCAGA
ACGAGGATTCGCAGGAGAAGAAGATCGTGGTCTCGGCAGAGCGGGTTTGG
GAAATCCTTAAGCATATCACCGATGAGGAGTGCTTTATTCTGGGCATGGA
TCCCAAGTATGCGCGTCCCGATTGGATGATCGTGACCGTCCTGCCTGTTC
CACCGTTGGCCGTACGGCCAGCGGTCGTGATGTTTGGTGCTGCCAAGAAT
CAGATGATTTGACGCACAAGCTGTCCGATATCATCAAGGCAAACAATGAG
CTTCGCAAGACGAGGCCAGTGGTGCCGCAGCGCATGTGATCCAGGAGAAC
ATCAAGATGCTGCATTCCACGTCGCCACACTAGTGGACAACGATATGCCC
CGGCATCCCAGGGCTTATGCAAAGTCGGAAACCCCTTAAGCCATCATGGC
GCGACTCAAGGTAGAGGGTAGATTCGTGGCAACTTGATGGGCAAACGTGT
CGACTTCTTCGCCCGTTCTGTCACTACCACCCCGAT
FMO11315.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:42:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpII215-RA | 6736 | CG1554-RA | 361..1435 | 9..1073 | 5010 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:42:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11568293..11569286 | 1073..90 | 4350 | 97.5 | Minus |
| X | 23542271 | X | 11569886..11569966 | 89..9 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:42:28 has no hits.
FMO11315.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:12 Download gff for
FMO11315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII215-RA | 353..1442 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:31:31 Download gff for
FMO11315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII215-RA | 357..1446 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:14:00 Download gff for
FMO11315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII215-RA | 357..1446 | 1..1086 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:14:00 Download gff for
FMO11315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11568282..11569286 | 90..1086 | 97 | <- | Minus |
| X | 11569886..11569970 | 1..89 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:31:31 Download gff for
FMO11315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11462315..11463319 | 90..1086 | 97 | <- | Minus |
| arm_X | 11463919..11464003 | 1..89 | 95 | | Minus |
