FMO11317.5prime Sequence
1106 bp (1020 high quality bases) assembled on 2011-12-09
> FMO11317.5prime
CAGTCGACATGCCCATGGAGGAGTTTCACGCTCGCGGCTGGTTCGAGGAG
CCCAAGACGCAGAATTCGGTGGCTCATGGCATTGGGACGCAGAATATGTT
GGAGCTGACCCCGCATTCGGGTCAGAAGCCTTTTAAGAAGCTATTCGACT
GGGGCGTGCTCTTCCCATATGTTGCCCAGGTGGTGCGCAGCGAGAAGTTC
GAGTACCGACAGGTCACCGAGATCGTGCACAACGATGCTGTACTGAAGCA
TGCAATTAAACAGGCCGCCGAGCAGACGCTAAGGGAGCAGAGATATGCTA
AAAATGGTCATCGTCTGCTCACGCGCAGTGCTAGTGGAGATCAGGAGGCG
CAGGAGGAGGAGGACGAGAAGAGGGGTATATCCTATCAGGCCATTCTGCG
TAAGCAGGAGCAGCGCGCCATTAGCATACTGAAGGACATGGGCTCCACTC
TGAACAATGGCCTTTTGGCCTTCACTTCCTGGATCCTGTACAAGTTGCTG
CCCTGCTTCCTCTCCGGAGTCGTTACGAACACGAAGCAGATCGAGATGCT
CAAAACAGCCACAGAGCGTTCGCCGGGCACTCCGCTGATATTTGTTCCGC
TGCATCGCAGCCACTTGGACTACATCATGGTCACATGGATACTCACGAAC
AACGATATACGCAGTCCTCTGGTAGCCGCTGGCAACAACCTGCAAATTCC
GGTCTTTGGTGGGCTCCTACGTGGTTTGGGTGCTTTCTTCATCAAACGCA
AGATTGATCCTGTGGAGGGCAAGAAAGACGTGCTTTATCGCGCTGCTCTA
CACCTGTATCTGACCCACGCCTTGAAGCAGGCCCACAACGTCGAGTTCTT
CATCGAGGGCGGACGAACGCGCACTGGCAAGCCGTGCATGCCCAAGGCGG
CATTCTTTCTGTGATTGTGAACGCCTTCATGGACGGCAGCATACCGGACG
CACTGCTGTACCCGTTTCCGTAAACTACGGAGCGTCTCGTCGACGAAACT
TTGTGCGCGAACAAAGGGCGAGAGAGATCCGATCAATCGGCAAAGTATTC
GGGCATTGAGCCTGAATCAAACTACGCCCATGCCCATCGACTTAACGAGC
CTATCC
FMO11317.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:42:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mino-RC | 2903 | CG5508-RC | 240..1351 | 9..1101 | 4980 | 97.6 | Plus |
| mino-RB | 2687 | CG5508-RB | 167..1240 | 47..1101 | 4790 | 97.5 | Plus |
| mino-RE | 3176 | CG5508-RE | 448..1520 | 48..1101 | 4785 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:42:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27930202..27931008 | 211..1015 | 3810 | 99.3 | Plus |
| 3R | 32079331 | 3R | 27929979..27930147 | 46..214 | 845 | 100 | Plus |
| 3R | 32079331 | 3R | 27929858..27929897 | 9..48 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:42:40 has no hits.
FMO11317.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:14 Download gff for
FMO11317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5508-RC | 235..1248 | 1..1015 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:31:39 Download gff for
FMO11317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5508-RC | 235..1248 | 1..1015 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:14:09 Download gff for
FMO11317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mino-RC | 235..1248 | 1..1015 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:14:09 Download gff for
FMO11317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27929853..27929896 | 1..47 | 91 | -> | Plus |
| 3R | 27929981..27930145 | 48..212 | 100 | -> | Plus |
| 3R | 27930204..27931008 | 213..1015 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:31:39 Download gff for
FMO11317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23755575..23755618 | 1..47 | 91 | -> | Plus |
| arm_3R | 23755703..23755867 | 48..212 | 100 | -> | Plus |
| arm_3R | 23755926..23756730 | 213..1015 | 99 | == | Plus |
