FMO11318.5prime Sequence
1105 bp (989 high quality bases) assembled on 2011-12-09
> FMO11318.5prime
CAGTCGACATGAAACCCTTAACTGTGAAAGTGAACGATGACACCGGCAAG
TCTTTGGCTAAGAAGAAGCTGCAGTCCAAGGCCAATTCCCTGCTAAATGC
CGAGCAAGTGGACATCAAAACGCTCAAGGGATTCGTACAATTGCTGAATA
CGCCCGATAATATGCCAGCTGGCGAGGTGATGAATACACTCGAGGTGATA
TTCAAGAATCTGCTAAAACGAAAGGCAATCGACGGCACCGAAAAGCAGGG
TCTCAAAATCAAAAAACTGTACGAGGAAACTTGGTTGCTTCTCATCGAGA
ATCTACTGGTTGACTCGCAGTGTTCGGTTGCTGTAAAAGTGTGCATGCAG
CTCATCAAAGTGGAGGCCAAGCATCCCATAGCACCCAACAAGGGTTGGCC
CACCTACTGGATTCGCGGCATGCTGGAAACCCTAATAAATAGCGATACAA
CGCCCACAACAGCGCTGGCAAACTATGGGAAATATTGCAAAAATCTCGAT
GTATTAGAGATAACCCTGACGCAATTGAAATCCTTAGTGCCCGATGAAGA
CTTCAAGGACAGCCCCATTAAGGCCATGAACTTTCTATCCATTGTAAACC
TCTTGGATATGGGAAAGTCTGTGCTGAGCACGGCAGATTACCACGTGGAA
AGCGCCAAAAAGCAGACTTTTAACTACGAGTTAAATCGCAAAAGACTGAA
TAATCTCTGGGCGACTATTATGGCAAAGGGCAACGAAGTGGACGAGAAAC
TGCATCGTCAAATACTTGTGGTGCTTCTGGAGCGCGTAATCAACCACCTG
AACGATCCCATCCAGCTGACCGACTTTCTCATGGACTCCCTCCATCAGTT
TGATGGCCCCATTGCCTTGCTGGCTCTTCAGGAATCTTTACGCTTATGCA
AAGCAGAATATCACCTATCCGGATGTGTATGAGAGCTGTACATATGTTCT
ATCCACGGATGTTCCACACAGTACCAGCACGCCTGTTTTACTGACGATAT
CTTTTCTGACCTCACCATTGCCGAGATCTGTTGCGCATTCGTAGCGTCTC
GCTCGCCTGCCTCATCGCCGACGGAGATGCCTGTAATTATGATTCGATTC
GCTGC
FMO11318.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:42:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2875-RC | 1975 | CG2875-RC | 118..1231 | 9..1101 | 4910 | 97.3 | Plus |
| CG2875-RB | 1710 | CG2875-RB | 118..1231 | 9..1101 | 4910 | 97.3 | Plus |
| CG2875-RA | 1713 | CG2875-RA | 118..1234 | 9..1101 | 4870 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:42:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3572595..3573301 | 852..146 | 3535 | 100 | Minus |
| X | 23542271 | X | 3573368..3573505 | 146..9 | 690 | 100 | Minus |
| X | 23542271 | X | 3572413..3572533 | 968..852 | 405 | 96.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:42:46 has no hits.
FMO11318.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:14 Download gff for
FMO11318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2875-RB | 116..1234 | 9..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:31:45 Download gff for
FMO11318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2875-RB | 118..1236 | 9..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:14:13 Download gff for
FMO11318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2875-RB | 118..1236 | 9..1105 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:14:13 Download gff for
FMO11318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3572595..3573300 | 147..852 | 100 | <- | Minus |
| X | 3573368..3573505 | 9..146 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:31:45 Download gff for
FMO11318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3466628..3467333 | 147..852 | 100 | <- | Minus |
| arm_X | 3467401..3467538 | 9..146 | 100 | | Minus |
