Clone FMO11319 Report

Search the DGRC for FMO11319

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:113
Well:19
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG8270-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11319.5prime Sequence

1130 bp (1019 high quality bases) assembled on 2011-12-09

> FMO11319.5prime
CAGTCGACATGGATAATTCCAATGGAATCCACTACATTGAGCTAACCCCA
AATCCCATACGATTTGATGCTGTCAGCCAACTAACCAATGTGTTTTTCGA
TGACTCCAACAAGCAGATATTTGCTGTTCGGTCTGGAGGAGCTACTGGTG
TGGTGGTCAAAGGTCCTGGATCTCCCGACGATGTCGTCATCTCCTTTTGC
ATGAGCGACCGTGGCGGTGCCATAAGGTCCATTAAGTTCTCGCCGGACAA
CCAAATCTTGGCCGTTCAGCGAAAGGAGAATTCCGTGGAGTTCATATGTT
TTCAGGGAGATCAGCCTCTGCTGCAGGACATCATTACCCACCAGGTGAAG
ACTCTGATCCATGGCTTTGTTTGGGTCCACAATCGGGAGGTGGCCCTGAT
TTCGAATACCGGCGTGGAGGTCTACACCGTAGTTCCTGAGAAGCGACAGG
TGCGCTCTGTGAAATCCCTGAGCATTGGCATCAAGTGGTTCGCCTGGTGC
TGCGATGCCAATGTGGCTCTACTGTGCACCAGCGAAGGAAACTCCCTGAT
TCCGGTGCTGGTCAAGCAGAAAGTAATCACCAAGCTGCCCAAAGTGGACT
TGGGCAATCCAAGTCGCGATGTCCAGGAGAGCAAGGTCACCTTAGGCCAA
GTTTACGGCGTGCTGGCTGTGCTTATCCTCCAGTCAAATAGCACCACCGG
ACTGATGGAAGTCGAGGTGCACTTGCTCAATGGACCGGGCTTGGCTCCAC
GCAAGTGCCATGTGCTCCGCTTAAGTCTGCTTGGTCGCTTCGCCATCAAC
ACGGTGGATAATCTGATTGTGGTGCACCATCAAGCTTCGGGCACTTCGCT
GCTATTCGACATCTCCCTGCCCGGGAGAGGTGATCAATGAAATAACCTAT
CATACACCCCATAACTCCAAGGGCGCTCCATCAAACCGTTTGGCCCTGAA
ACTGCCCTCACTTTCGCCTGATGGAAAAATCTTGCAGTGCGAGTTGTATT
CCACGCACTGGGTACTGTTCAGCCAATATTGTATCGAATGCCAAGTTTGG
TTGCATGTATGTTGAACCTCTGCATGAACCATGGTGCCAACTGATTTCCG
AATCGCATCGACTTACAAATCCTGGCTGCA

FMO11319.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG8270-RB 2170 CG8270-RB 81..1190 9..1117 5160 98.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:42:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6488928..6489413 115..600 2415 99.8 Plus
3L 28110227 3L 6489470..6489862 601..997 1770 98.7 Plus
3L 28110227 3L 6488761..6488872 9..120 545 99.1 Plus
Blast to na_te.dros performed on 2014-11-27 00:42:53 has no hits.

FMO11319.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:15 Download gff for FMO11319.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8270-RB 76..1204 1..1124 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:31:51 Download gff for FMO11319.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8270-RB 71..1199 1..1124 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:14:17 Download gff for FMO11319.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8270-RB 71..1199 1..1124 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:14:17 Download gff for FMO11319.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6489470..6489862 601..997 98 -> Plus
3L 6488751..6488868 1..116 96 -> Plus
3L 6488930..6489413 117..600 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:31:51 Download gff for FMO11319.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6481851..6481968 1..116 96 -> Plus
arm_3L 6482030..6482513 117..600 99 -> Plus
arm_3L 6482570..6482962 601..997 98 -> Plus