FMO11320.5prime Sequence
1134 bp (1022 high quality bases) assembled on 2011-12-09
> FMO11320.5prime
CAGTCGACATGCGGAAAAGTATTGTTTTCATCGGTTTAATAGCGCTTTTC
CAGAGTTGCTTGGCTGAAACGCCGGAAACGTATCTCCTCAAAACACACAG
TCTTCCCTCGGACCTGAATTTTATGCCCACCCTGGGCAATGGCCACGTGG
GATACACGATCTTCGGAGATGCGATCTTTATGAATGGAGTCTACAACGGA
GCCGGCGGAAACAGCAAGCGTGCTCGCATTCCCAACTGGATAAATATCAG
CACGGAAGCTTGTGATCGGTTCGGTTGTGCCACTGACAGCGATGTGGTAA
ATGGAACCAGCTACGAGATGAATCTACGAGATGGCTACTTCCGGGTTGTC
ACAACATACAGAGGACTAGGGATTTCAGTGGAACAGAGAACCTATCCGCA
CAAGTACTACAATCGTGCTTTAGTCTATGAAGTGGTGGCTAATAGACTTG
CTGGCCGAAACTCAAGGATTAACTCTCCAAAGTTCCTAAGGCTAACACAA
TTCGCTGGTAACTTCAGTGATGCCTTCGACTTTGTGGTGGTCAACAATGG
CAGCTCAGCCAGCGGCAATTACCGCACACTTCGCGGACAAACAAAGGTGG
TTGAGAACGAGCAGTTCCAACCAGATCCTCAGGAGATCTTTGTCCTCTTC
AGTGAATCCTTGGAGCAACCCCTTGAACTGCAGTGGCCCACGTGGCAGGA
TCAATTAAGCCATCGAGTTATCATTGCCATAGACAGAGACGAAAGTGTGA
CACGAAAGGAACTGCAGATGTGCTTCAGTTGAGCTCCGATAATCTTCTCC
AGAAGCACTCGCAATCGTGGAACAGTTTTGGGACGATGAGTTCTCCATTG
AAATCAAGGGTGATGCTCTGGAACTGTCGCAGATTGTAAATGCTGGCATA
TTCTAAATAGTAAGTTCCCTTCCGTCACTGGAAACCAATCAGAAAAAACG
AACTATTCTATGGATTAAGTCCTACTGGCTTGGGGCGTGCCAATCTGAGC
GGATTACCAGGCACAACTTCTTGGACACGAGAATCTGAATGCTGCCGATA
GTTCCGCTATTCGGCCTGATATGCAAAAGAAGGTGTGCTGGGCTAATCGC
AAGCGAAAAGTTGAAGCAGCCTAAATAACTGGCA
FMO11320.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:37:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16965-RC | 2300 | CG16965-RC | 42..1162 | 9..1127 | 5080 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:37:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11982414..11983009 | 475..1065 | 2570 | 97.3 | Plus |
| 2L | 23513712 | 2L | 11981977..11982354 | 97..474 | 1890 | 100 | Plus |
| 2L | 23513712 | 2L | 11981632..11981723 | 9..100 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:37:10 has no hits.
FMO11320.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:04:41 Download gff for
FMO11320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16965-RB | 17..1099 | 9..1085 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:28:00 Download gff for
FMO11320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16965-RC | 42..1124 | 9..1085 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:27 Download gff for
FMO11320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16965-RC | 42..1124 | 9..1085 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:11:27 Download gff for
FMO11320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11981632..11981723 | 9..100 | 100 | -> | Plus |
| 2L | 11981981..11982354 | 101..474 | 100 | -> | Plus |
| 2L | 11982414..11983012 | 475..1068 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:28:00 Download gff for
FMO11320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11981632..11981723 | 9..100 | 100 | -> | Plus |
| arm_2L | 11981981..11982354 | 101..474 | 100 | -> | Plus |
| arm_2L | 11982414..11983012 | 475..1068 | 97 | -> | Plus |
