FMO11322.5prime Sequence
1139 bp (1032 high quality bases) assembled on 2011-12-09
> FMO11322.5prime
CAGTCGACATGAGACTTTGTGTGTTCTTATCATTGTTGGGACTTAATATT
CACTTGGAGGTGCTTGCTAATGGCATCGCAAATCGTTACTTTTTGGAAAA
GCAGCGTTTTTTGTTGGAAATTCTACATCATGTTAACGAACCTTTGATGA
ACGAACAGTGGCGATTATTGGGAAAACAATTGGTGACAGATAAGGAACAG
TATGTGGTCTACAACGAGCAAATGACACGTTTCTATGAAGACTTCAGTTT
GGGAAAACTTTTACATCGAAATGTACGATATAATCCCCTCTATGCCGATC
ATTATCGGCAGATGCTGGGATTATATCAATTTTTCTACAACGCCAGGGAT
TGGTATACCTTATGGCAAAATATAAGCTGGGCCCGAGTTCATGTGCATCC
GTGTATTTTTGTTCAAGCTCTCACTCAATTGATCCTCAAAAGAGAGGACT
ATCAGGCCTTGATTATGCCCAAGATCTATGAATTGTGGCCAGAATCGTAT
CACGATGATGTAACAGTGAGAAAAGCAAGAAATTTCAATTTTGCCAACTG
GATAAGATACGTGAATATGACCGATGTAGAAGAAATCCATCCGCAAAAAT
TGGAACCTTTAAATTTGGAAGGTAATCTTCGAGGTACCATTGAATGGTTT
CAGGCCATGGCTGATGTGAATATTCTAAGGATGAATGAACAGAAAAAGAG
AAATAAGTTAGAACACTTGTTAGAAGATATAGATTGGCAATCGTATTGGT
ATAATCTGAACATGGGAGTGATTTTAACAGCCGAAAATTCAGATCAGTTG
CGCGAATGGTGCTACTATCAGTTGAGTCAATACTGGCTCGTTATAAACTT
GAATGTTATGGCCAAAAGATGGCTTACAAGAAGGCTGACACAAAATCGTG
GCATAAACGAGGAATTCCAATTTTATAACTAAAAAGATTATCCGAATTGG
AGGCAAAAGTTGGGGATACCATTTCATTTCAAAGTATTCAGCTAACTATT
GGAAGTCGTATTTAATCTGAATGAAAACAACAATTGGGCTTATCGAACTT
GAAGAACTTATTTCCTATTGAATGGACACAATTAGCTGGTGGAATGAAGG
TATATCAAATCTAAATATTTTACTGGAATATCGAACTTA
FMO11322.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:37:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7320-RB | 2023 | CG7320-RB | 8..1130 | 5..1137 | 5145 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:37:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18201823..18202700 | 206..1088 | 3935 | 98.2 | Plus |
| 3L | 28110227 | 3L | 18201635..18201766 | 78..209 | 660 | 100 | Plus |
| 3L | 28110227 | 3L | 18201501..18201574 | 5..78 | 355 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:37:22 has no hits.
FMO11322.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:04:43 Download gff for
FMO11322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7320-RA | 1..1049 | 79..1138 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:28:08 Download gff for
FMO11322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7320-RB | 2..1130 | 1..1138 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:31 Download gff for
FMO11322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7320-RB | 2..1130 | 1..1138 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:11:31 Download gff for
FMO11322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18201495..18201574 | 1..78 | 96 | -> | Plus |
| 3L | 18201636..18201763 | 79..206 | 100 | -> | Plus |
| 3L | 18201824..18202744 | 207..1138 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:28:08 Download gff for
FMO11322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18194736..18194863 | 79..206 | 100 | -> | Plus |
| arm_3L | 18194595..18194674 | 1..78 | 96 | -> | Plus |
| arm_3L | 18194924..18195844 | 207..1138 | 97 | | Plus |
