FMO11325.5prime Sequence
1119 bp (989 high quality bases) assembled on 2011-12-09
> FMO11325.5prime
CAGTCGACATGAATCTCCTACAAAGAATCGCAAATTGGGCCTCAGACAAT
CGGGATGGCAATGTGGCAGATAAGTCAGCTGCTGATGCCGCTAAACTCAA
CAGGAAGGAATCGTACAAGGCGCAGAGGAAGAACTACAGGCGGGAGAAGA
AACGAGTGGCCAGTGAGCTGATGAACTCCCTGCAGGATCCTGCAGTTATA
GTGCTGGCAGATTGGCTAAAGGTTCGTGGCACACTAAAGTCCTGGACGAA
ACTGTGGTGCGTTCTGAAGCCTGGCCTACTGCTGATTTACAAGAGCCAAA
AGACGAAGAGCAGCCACTGGGTGGGCACGGTGATGCTCACCTCATGCCAG
GTGATCGAGCGCCCGAGCAAAAAGGATGGCTTCTGTTTCAAGCTCTTCCA
TCCCCTGGAACAGTCCATTTGGGCGCCGCGCGGTCCTGACAAGGAAACCA
TTGGTGCCGTGGTCCAGCCGTTGCCAACCGCTTACCTGATCTTTCGAGCT
CCCAGTCAGGCGGCCGGCAAGTGCTGGATGGATGCCCTGGAGCTGTCCCT
GAGATGTTCGGCCCTCCTGTTGCGTTCGAATAGCAGTACGGGCACTGCTC
CAACGTCCAGCTATATCGGCGAACCGCTGCCCGTCTCCCATGAGACGCAG
TGGTCGGAGGCGGACTACGAGAAGCACTTCAACGATCACGATTTGGACGC
TGACAGCCAGAATGAAGCACCCAATGCCGTCATGTCTGGTCTGGAGTCGG
AATCCGAATCGGATCCGGCAGAGCCGGCGCAGGATGATGTCGTTGATCAG
CAGTGTGTGGAGACCTCGTATGTGCCCTTCACTGAGAGGAGTTTGGCGAG
CAAAGGGGAGCAGTGCGACCGGGAATGGATTTGAGCAAGGTAGTACTACC
CACATTTATCCTGAGCCCCGCTCATTCCTGACAAGTTATCCGACTCGTAT
TACCATGCGACTGCTCTCTAAGGCCGTTCAGAGATGACGCGTCACCCCGC
ATGAAGCTGTATGCAATGGTACCTGTCCAGCTTTACAAAAATCCTAGGAC
TTAAAGAGGCCCTTACATCCGATTCTGGGCGAGAGTTCGTGCCATGGCAG
CATCCATGCAGCCGAACGT
FMO11325.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:37:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42668-RF | 3410 | CG5077-RF | 266..1378 | 8..1105 | 4960 | 97.5 | Plus |
CG42668-RH | 3464 | CG5077-RH | 266..1121 | 8..863 | 4235 | 99.8 | Plus |
CG42668-RN | 3324 | CG42668-RN | 143..981 | 25..863 | 4150 | 99.8 | Plus |
CG42668-RH | 3464 | CG5077-RH | 1176..1432 | 863..1105 | 750 | 90.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:37:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20320214..20320451 | 453..690 | 1190 | 100 | Plus |
3R | 32079331 | 3R | 20319767..20320002 | 220..455 | 1180 | 100 | Plus |
3R | 32079331 | 3R | 20321475..20321636 | 690..850 | 760 | 99.4 | Plus |
3R | 32079331 | 3R | 20319562..20319712 | 73..223 | 755 | 100 | Plus |
3R | 32079331 | 3R | 20321768..20321866 | 863..959 | 395 | 98 | Plus |
3R | 32079331 | 3R | 20318977..20319026 | 25..74 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:37:51 has no hits.
FMO11325.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:04:45 Download gff for
FMO11325.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42668-RH | 171..1032 | 1..862 | 99 | -> | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:28:26 Download gff for
FMO11325.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42668-RF | 260..1378 | 1..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:45 Download gff for
FMO11325.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42668-RF | 260..1378 | 1..1105 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:11:45 Download gff for
FMO11325.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20321768..20321880 | 863..971 | 96 | -> | Plus |
3R | 20318977..20319030 | 25..78 | 96 | -> | Plus |
3R | 20319568..20319710 | 79..221 | 100 | -> | Plus |
3R | 20319769..20320000 | 222..453 | 100 | -> | Plus |
3R | 20320215..20320451 | 454..690 | 100 | -> | Plus |
3R | 20321476..20321644 | 691..862 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:28:26 Download gff for
FMO11325.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16144699..16144752 | 25..78 | 96 | -> | Plus |
arm_3R | 16145290..16145432 | 79..221 | 100 | -> | Plus |
arm_3R | 16145491..16145722 | 222..453 | 100 | -> | Plus |
arm_3R | 16145937..16146173 | 454..690 | 100 | -> | Plus |
arm_3R | 16147198..16147366 | 691..862 | 95 | -> | Plus |
arm_3R | 16147490..16147602 | 863..971 | 96 | -> | Plus |