Clone FMO11325 Report

Search the DGRC for FMO11325

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:113
Well:25
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG42668-RF
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11325.5prime Sequence

1119 bp (989 high quality bases) assembled on 2011-12-09

> FMO11325.5prime
CAGTCGACATGAATCTCCTACAAAGAATCGCAAATTGGGCCTCAGACAAT
CGGGATGGCAATGTGGCAGATAAGTCAGCTGCTGATGCCGCTAAACTCAA
CAGGAAGGAATCGTACAAGGCGCAGAGGAAGAACTACAGGCGGGAGAAGA
AACGAGTGGCCAGTGAGCTGATGAACTCCCTGCAGGATCCTGCAGTTATA
GTGCTGGCAGATTGGCTAAAGGTTCGTGGCACACTAAAGTCCTGGACGAA
ACTGTGGTGCGTTCTGAAGCCTGGCCTACTGCTGATTTACAAGAGCCAAA
AGACGAAGAGCAGCCACTGGGTGGGCACGGTGATGCTCACCTCATGCCAG
GTGATCGAGCGCCCGAGCAAAAAGGATGGCTTCTGTTTCAAGCTCTTCCA
TCCCCTGGAACAGTCCATTTGGGCGCCGCGCGGTCCTGACAAGGAAACCA
TTGGTGCCGTGGTCCAGCCGTTGCCAACCGCTTACCTGATCTTTCGAGCT
CCCAGTCAGGCGGCCGGCAAGTGCTGGATGGATGCCCTGGAGCTGTCCCT
GAGATGTTCGGCCCTCCTGTTGCGTTCGAATAGCAGTACGGGCACTGCTC
CAACGTCCAGCTATATCGGCGAACCGCTGCCCGTCTCCCATGAGACGCAG
TGGTCGGAGGCGGACTACGAGAAGCACTTCAACGATCACGATTTGGACGC
TGACAGCCAGAATGAAGCACCCAATGCCGTCATGTCTGGTCTGGAGTCGG
AATCCGAATCGGATCCGGCAGAGCCGGCGCAGGATGATGTCGTTGATCAG
CAGTGTGTGGAGACCTCGTATGTGCCCTTCACTGAGAGGAGTTTGGCGAG
CAAAGGGGAGCAGTGCGACCGGGAATGGATTTGAGCAAGGTAGTACTACC
CACATTTATCCTGAGCCCCGCTCATTCCTGACAAGTTATCCGACTCGTAT
TACCATGCGACTGCTCTCTAAGGCCGTTCAGAGATGACGCGTCACCCCGC
ATGAAGCTGTATGCAATGGTACCTGTCCAGCTTTACAAAAATCCTAGGAC
TTAAAGAGGCCCTTACATCCGATTCTGGGCGAGAGTTCGTGCCATGGCAG
CATCCATGCAGCCGAACGT

FMO11325.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:37:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG42668-RF 3410 CG5077-RF 266..1378 8..1105 4960 97.5 Plus
CG42668-RH 3464 CG5077-RH 266..1121 8..863 4235 99.8 Plus
CG42668-RN 3324 CG42668-RN 143..981 25..863 4150 99.8 Plus
CG42668-RH 3464 CG5077-RH 1176..1432 863..1105 750 90.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20320214..20320451 453..690 1190 100 Plus
3R 32079331 3R 20319767..20320002 220..455 1180 100 Plus
3R 32079331 3R 20321475..20321636 690..850 760 99.4 Plus
3R 32079331 3R 20319562..20319712 73..223 755 100 Plus
3R 32079331 3R 20321768..20321866 863..959 395 98 Plus
3R 32079331 3R 20318977..20319026 25..74 250 100 Plus
Blast to na_te.dros performed on 2014-11-27 00:37:51 has no hits.

FMO11325.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:04:45 Download gff for FMO11325.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42668-RH 171..1032 1..862 99 -> Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:28:26 Download gff for FMO11325.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42668-RF 260..1378 1..1105 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:45 Download gff for FMO11325.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42668-RF 260..1378 1..1105 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:11:45 Download gff for FMO11325.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20321768..20321880 863..971 96 -> Plus
3R 20318977..20319030 25..78 96 -> Plus
3R 20319568..20319710 79..221 100 -> Plus
3R 20319769..20320000 222..453 100 -> Plus
3R 20320215..20320451 454..690 100 -> Plus
3R 20321476..20321644 691..862 95 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:28:26 Download gff for FMO11325.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16144699..16144752 25..78 96 -> Plus
arm_3R 16145290..16145432 79..221 100 -> Plus
arm_3R 16145491..16145722 222..453 100 -> Plus
arm_3R 16145937..16146173 454..690 100 -> Plus
arm_3R 16147198..16147366 691..862 95 -> Plus
arm_3R 16147490..16147602 863..971 96 -> Plus