FMO11327.5prime Sequence
1115 bp (957 high quality bases) assembled on 2011-12-09
> FMO11327.5prime
CAGTCGACATGTCACTTGCCTCGAGGACGAGTGTTAAGTCAGGCGGCAGC
GAAGTGGACTTAAGGCAACGGAATGCCAGCATCCGGAACCTCTTCGCCCC
CTCGTCGGCTGAGTTGGCCAAAAAAAAGGAAGCTCGTCAGAGGAGCCGCA
GCCAGAGCAGCTTTTCGCTCCAGAGGGCCAGCAGCCAGGATGACGGGATT
GGTAATGGTATGGGAATGGGGCTTGGGAGCAAGATGGGCAGCCAGATGGG
CCTGCCCAACTCCAAGAGCTTCGATGATTACGCTCTGGGCATAAATCAAT
TGCCAATGACTGCGAATCAATCGGCAGTGAGACAATACAATGGCCAGGAC
CATAACGTGCTGGGCTCAAGTCCCTATGCACCGGCTTCTACAAGGGCAAC
GGCATTGGTAATTCCCAGGACATCGCACAATGGCTGCCATCAGAGTGCAT
TTGAATTGGCAATGAGCCGGACTCCATCGGAGCACAAAAACTGGAAGTCG
ACGAGCCAGCTGGAAAATTTTATTAACAGCAACGAGAAGCTGCAGCAGGA
GCAGTGGCAGCAGCACCAGCAGCAGGACACTTCTGTTGACTTTGGTAATG
AAATGACCTGGGGCAAATCTGCTGAGAAATCGCTGCCATTGAATCACCTG
GTGCAAGAAAGAAGGATTTTCCCGAGACGACCAGTGGGATTTGGACTTTC
AGACGGAGCAGCGCGAAAGTTTGCAGAGCCAAGCTATCGACCGGCGGTCG
CAGCGGCAGCTCAATCGACGCCGTTGGCACAGCGCCTTCAGCGCTTTCGA
TATCGCCAGCAATTGCAGTTGCAGCAAGAGCCGCATCAGCAACAGCAACA
GCAACAGCACCAGCAGCAGCAACAACAATCGACTGCTGATATCAACGTTT
ACGATAGCCCCTTTAACGGCCAGTTAATCAACCTGAACGAATAAGCCGTT
ACCCAATTGAGCGGAGGGGGAAACGTCGAAGGCCCAATTGCGGGAAAACC
TCCAGTTGATGCCTGAATATCAGCGGACTAGGAGAAAACTGCCGCCGGAA
TCGAATGCTATTTCCGAAATCGGAACCGGAAGGATAGAAGGAAGAACACG
GCCCCGAAACCTCTC
FMO11327.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:38:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31145-RD | 3519 | CG31145-RD | 482..1545 | 9..1080 | 4725 | 96.8 | Plus |
| CG31145-RC | 4524 | CG31145-RC | 482..1545 | 9..1080 | 4725 | 96.8 | Plus |
| CG31145-RB | 2595 | CG31145-RB | 276..617 | 731..1080 | 1160 | 90.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:38:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23631488..23632186 | 732..33 | 3450 | 99.9 | Minus |
| 3R | 32079331 | 3R | 23627268..23627462 | 926..732 | 945 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:38:06 has no hits.
FMO11327.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:04:47 Download gff for
FMO11327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31145-RD | 473..1460 | 1..995 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:28:38 Download gff for
FMO11327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31145-RC | 476..1463 | 1..995 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:51 Download gff for
FMO11327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31145-RC | 476..1463 | 1..995 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:11:51 Download gff for
FMO11327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23627268..23627460 | 734..926 | 98 | <- | Minus |
| 3R | 23631486..23632186 | 33..733 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:28:38 Download gff for
FMO11327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19452990..19453182 | 734..926 | 98 | <- | Minus |
| arm_3R | 19457208..19457908 | 33..733 | 99 | <- | Minus |
